Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHB28_RS06950 Genome accession   NZ_CP107981
Coordinates   1562376..1563368 (+) Length   330 a.a.
NCBI ID   WP_327666012.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00356     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1557376..1568368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB28_RS06935 (OHB28_06940) - 1558360..1559280 (-) 921 WP_328631020.1 carbohydrate ABC transporter permease -
  OHB28_RS06940 (OHB28_06945) - 1559297..1560238 (-) 942 WP_328635402.1 sugar ABC transporter permease -
  OHB28_RS06945 (OHB28_06950) - 1560401..1561711 (-) 1311 WP_328631021.1 extracellular solute-binding protein -
  OHB28_RS06950 (OHB28_06955) cytR 1562376..1563368 (+) 993 WP_327666012.1 LacI family DNA-binding transcriptional regulator Regulator
  OHB28_RS06955 (OHB28_06965) - 1563626..1563868 (+) 243 WP_327675818.1 hypothetical protein -
  OHB28_RS06960 (OHB28_06970) - 1563910..1564470 (-) 561 WP_327673271.1 TetR family transcriptional regulator -
  OHB28_RS06965 (OHB28_06975) - 1564633..1565331 (+) 699 WP_327673269.1 SDR family oxidoreductase -
  OHB28_RS06970 (OHB28_06980) - 1565401..1566456 (+) 1056 WP_328631022.1 aldo/keto reductase -
  OHB28_RS06975 (OHB28_06985) - 1566648..1567652 (+) 1005 WP_328631023.1 NADP-dependent oxidoreductase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 35359.06 Da        Isoelectric Point: 5.7795

>NTDB_id=650637 OHB28_RS06950 WP_327666012.1 1562376..1563368(+) (cytR) [Streptomyces sp. NBC_00356]
MKTVAARAGVGRTTVSRVVNGSELVSEKAREAVLSAIAELGYVPNSVARGLVTSRTNAVALVIPESESRLGSEPYFSAVI
RGVSAALADTRTQLQLTLVRDQAERDQLTRSVAERRVDGVLLVSVHEHDVLPGLLESAGLPTVLAGRRREDDPLSYVCAD
NRGGAASAVRHLLDRGRRRIATVAGPQDMEVGRSRLRGCQEALVEAGIPAEEHLVEVGDFTEEGARAAMRSLLERAPDLD
AVFAASDLMAAGALLELRAQGRRVPEDVSVVGFEDSYLARHTNPPLTTVRQPTEEIGGTIARTLLREIGNPAVARTRLVL
DTELVVRESS

Nucleotide


Download         Length: 993 bp        

>NTDB_id=650637 OHB28_RS06950 WP_327666012.1 1562376..1563368(+) (cytR) [Streptomyces sp. NBC_00356]
ATCAAGACCGTGGCGGCGCGGGCAGGCGTCGGGCGCACCACTGTCTCCCGTGTGGTGAACGGCTCGGAGCTGGTCAGCGA
GAAGGCGCGGGAGGCCGTACTCAGCGCCATCGCGGAACTGGGCTACGTCCCCAATTCGGTGGCCCGCGGCCTGGTCACCA
GCCGTACCAACGCCGTCGCCCTGGTCATCCCCGAGTCCGAGAGCCGGCTCGGCTCGGAGCCCTACTTCTCCGCGGTGATC
CGCGGGGTGAGCGCCGCGCTCGCCGACACGCGCACCCAGCTCCAGCTGACGCTCGTCCGCGACCAGGCCGAACGCGACCA
GCTCACCCGGTCCGTCGCCGAACGCCGGGTCGACGGCGTGCTGTTGGTCTCGGTGCACGAACACGACGTCCTGCCGGGCC
TGTTGGAGTCGGCCGGCCTGCCGACCGTCCTCGCGGGCCGCCGCCGCGAGGACGACCCGCTCAGCTACGTCTGCGCCGAC
AACCGGGGCGGGGCCGCCAGCGCCGTGCGCCACCTCCTGGACCGGGGCCGGCGCCGGATCGCCACTGTCGCGGGCCCCCA
GGACATGGAGGTCGGCCGCAGCCGGTTGCGCGGCTGCCAGGAAGCACTCGTCGAGGCGGGCATCCCGGCGGAGGAACACC
TGGTCGAGGTCGGCGACTTCACCGAGGAAGGGGCGCGCGCGGCGATGCGTTCGCTACTTGAACGTGCCCCGGACCTGGAC
GCCGTGTTCGCCGCCTCCGACCTGATGGCCGCGGGCGCCCTCCTCGAACTGCGCGCCCAGGGTCGCCGCGTACCGGAGGA
TGTCTCGGTCGTCGGATTCGAGGACTCCTACCTCGCCCGCCACACCAACCCGCCGCTCACGACGGTCCGCCAGCCCACGG
AGGAGATCGGCGGCACGATCGCCCGCACGCTCCTCCGCGAGATCGGGAACCCGGCGGTTGCGCGCACGCGGCTTGTGCTG
GATACGGAGTTGGTGGTGCGGGAGTCGTCGTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-330)

Bacterial regulatory proteins, lacI family (LacI)

(1-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.735

100

0.382
  cytR Vibrio parahaemolyticus RIMD 2210633

35.103

100

0.361