Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHT01_RS26945 Genome accession   NZ_CP107976
Coordinates   6330618..6332351 (-) Length   577 a.a.
NCBI ID   WP_328555693.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00358     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6325618..6337351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT01_RS26935 (OHT01_26900) - 6327207..6328511 (+) 1305 WP_328555691.1 RNA polymerase sigma factor -
  OHT01_RS26940 (OHT01_26905) rcrQ 6328690..6330618 (-) 1929 WP_328555692.1 ABC transporter ATP-binding protein Regulator
  OHT01_RS26945 (OHT01_26910) rcrP 6330618..6332351 (-) 1734 WP_328555693.1 ABC transporter ATP-binding protein Regulator
  OHT01_RS26950 (OHT01_26915) - 6332516..6333970 (-) 1455 WP_328555694.1 FGGY family carbohydrate kinase -
  OHT01_RS26955 (OHT01_26920) - 6334045..6334350 (-) 306 WP_328555695.1 YtxH domain-containing protein -
  OHT01_RS26975 (OHT01_26940) - 6335273..6336862 (-) 1590 WP_328555696.1 FAD-dependent oxidoreductase -
  OHT01_RS26980 (OHT01_26945) - 6336859..6336990 (-) 132 WP_328555697.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62769.16 Da        Isoelectric Point: 6.5093

>NTDB_id=650611 OHT01_RS26945 WP_328555693.1 6330618..6332351(-) (rcrP) [Streptomyces sp. NBC_00358]
MLIRLLRTHLSPYKKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILTFGALMIGISLTQVVCNIGAVYFGA
RTASAVGRDIRGAVFDRVQSFSAREMGHFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIILALGLDVPLSAV
LVAVVPTLGICVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDGYEKERFKGANTELTETSLATGRMLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGQMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLSTESSVVP
PAAPVLELRRHGHLEIREAGFRYPGAEEPVLKSVDLVARPGEVTAVIGSTGSGKSTLLGMIPRLFDATDGQVLVDGVDVA
TIEPKLLARTVGLVPQKPYLFAGTVATNLRYGNPEATDEELWHALEVAQAKGFVEQLENGLDSPIAQGGTNVSGGQRQRL
AIARTLMQRPEIYLFDDSFSALDYATDAALRAALTAETAEATVVIVAQRVSTIREADRIVVLDEGRVVGSGRHRELMAEN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=650611 OHT01_RS26945 WP_328555693.1 6330618..6332351(-) (rcrP) [Streptomyces sp. NBC_00358]
GTGCTCATACGACTCCTGCGGACCCACCTCAGTCCGTACAAGAAACCCATCGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACCCTGAACGCGCACATCATCGACAACGGTGTCGTGAAGGGTGACACGGGCTACA
TCCTGACCTTCGGCGCCCTGATGATCGGCATCTCGCTGACCCAGGTCGTCTGCAACATCGGGGCCGTCTACTTCGGGGCC
CGTACGGCCTCCGCGGTCGGCCGGGACATCCGGGGCGCCGTCTTCGACCGCGTCCAGTCCTTCTCGGCACGTGAGATGGG
CCACTTCGGCGCGCCGTCGCTGATCACCCGCACCACCAATGACGTCCAGCAGGTGCAGATGCTCGCCCTGATGACGTTCA
CCCTGCTGGTGTCGGCACCGATCATGTGTGTGGGCGGCATCATCCTGGCCCTCGGCCTGGACGTGCCGCTGTCCGCGGTG
CTCGTCGCCGTGGTGCCGACCCTCGGCATCTGCGTGACGCTCATCGTGCGCCGGCTGCGCCCGCTGTTCCGCACCATGCA
GGTGCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTGCGCGACG
GCTACGAGAAGGAACGCTTCAAGGGCGCCAACACCGAACTCACCGAGACGTCGCTGGCCACCGGCCGGATGCTGGCCCTG
ATGTTCCCGATCGTCATGACGGTCGTGAACCTGTCGTCCATCGCAGTCGTCTGGTTCGGCGCCCACCGCATCGACAGCGG
CCAGATGCAGATCGGCGACCTGACCGCGTTCCTTGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGTGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTCTCCACCGAGAGCAGCGTGGTCCCG
CCGGCCGCGCCCGTCCTGGAGCTGCGCCGGCACGGCCACCTGGAGATCCGGGAGGCCGGGTTCCGCTACCCGGGCGCCGA
GGAGCCGGTCCTGAAGTCCGTCGACCTGGTCGCGCGCCCCGGCGAGGTGACCGCGGTCATCGGGTCGACGGGCAGCGGGA
AGTCGACCCTGCTCGGCATGATCCCCCGCCTGTTCGACGCCACCGACGGCCAGGTGCTGGTCGACGGCGTGGACGTGGCG
ACCATCGAGCCGAAGCTGCTGGCCAGGACGGTCGGGCTGGTCCCGCAGAAGCCGTACCTGTTCGCCGGGACCGTCGCCAC
GAACCTGCGGTACGGCAACCCGGAGGCGACCGACGAGGAGCTCTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TCGAACAGCTGGAGAACGGGCTCGACTCGCCGATCGCGCAGGGCGGCACGAACGTGTCCGGCGGCCAGCGGCAGCGCCTG
GCCATCGCCCGCACCCTCATGCAGCGCCCCGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCCCTGACCGCGGAGACCGCGGAGGCCACCGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCA
GGGAGGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGCAGCGGACGGCATCGTGAACTGATGGCCGAGAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.175

100

0.395