Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHT01_RS26940 Genome accession   NZ_CP107976
Coordinates   6328690..6330618 (-) Length   642 a.a.
NCBI ID   WP_328555692.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00358     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6323690..6335618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT01_RS26930 (OHT01_26895) dnaG 6325066..6326970 (+) 1905 WP_328555690.1 DNA primase -
  OHT01_RS26935 (OHT01_26900) - 6327207..6328511 (+) 1305 WP_328555691.1 RNA polymerase sigma factor -
  OHT01_RS26940 (OHT01_26905) rcrQ 6328690..6330618 (-) 1929 WP_328555692.1 ABC transporter ATP-binding protein Regulator
  OHT01_RS26945 (OHT01_26910) rcrP 6330618..6332351 (-) 1734 WP_328555693.1 ABC transporter ATP-binding protein Regulator
  OHT01_RS26950 (OHT01_26915) - 6332516..6333970 (-) 1455 WP_328555694.1 FGGY family carbohydrate kinase -
  OHT01_RS26955 (OHT01_26920) - 6334045..6334350 (-) 306 WP_328555695.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69497.87 Da        Isoelectric Point: 5.9105

>NTDB_id=650610 OHT01_RS26940 WP_328555692.1 6328690..6330618(-) (rcrQ) [Streptomyces sp. NBC_00358]
MAGPMGRMMAGTGPDQRSMDFKVSGRRLLTQFKPERATLYVMLVTVVLSVGLSVVGPKILGRATDLVFSGIVGRQMPAGA
TKAQALDSLRAHGKGAVADMLSGTDFTPGKGIDFTAVGNILLLALCTFLLAGLLMAVATRLVNRSVNRTVYRMREDLQAK
LSRLPLSYFDKRQRGEVLSRATNDMDNIQQTLQQSMGQLVNSLLTIVGVLAMMFWVSPLLALVALVTVPLSFVVATRVGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHNLVKVFGRADESAAQFAEQNDKLYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFEVLDAEEQEADPAESVRPEELRGRVALE
NVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVTAGRITLDGVDVASMSRDELRSGIGMVLQDT
WLFGGTIADNIAYGASRDVTRGEIEEAARAAHADRFIRTLPEGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMEDGSIVEQGAHAELLESGGAYARLYQAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=650610 OHT01_RS26940 WP_328555692.1 6328690..6330618(-) (rcrQ) [Streptomyces sp. NBC_00358]
ATGGCCGGGCCTATGGGGCGCATGATGGCCGGGACCGGCCCTGACCAGCGCTCGATGGATTTCAAGGTGTCGGGCCGACG
GCTCCTCACCCAGTTCAAGCCCGAGCGCGCCACGCTGTACGTGATGCTGGTCACCGTCGTGCTGAGCGTCGGCCTCTCGG
TGGTCGGCCCGAAGATCCTCGGCAGGGCCACCGACCTGGTCTTCTCGGGGATCGTCGGACGCCAGATGCCGGCCGGGGCC
ACCAAGGCCCAGGCCCTGGACTCGCTGCGCGCGCACGGCAAGGGCGCCGTCGCCGACATGCTCTCGGGGACGGACTTCAC
CCCCGGCAAGGGCATCGACTTCACCGCCGTCGGGAACATCCTGCTGCTCGCGCTCTGCACGTTCCTGCTGGCCGGCCTGC
TGATGGCGGTGGCGACGCGGCTGGTGAACCGGTCCGTCAACAGGACCGTCTACCGCATGCGCGAGGACCTGCAGGCGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGTGAGGTCCTCAGCCGCGCGACGAACGACATGGACAA
CATCCAGCAGACGCTCCAGCAGTCGATGGGCCAGCTCGTCAACTCGCTGCTGACCATCGTGGGCGTGCTCGCGATGATGT
TCTGGGTGTCGCCGCTGCTCGCGCTCGTCGCGCTGGTCACGGTGCCGCTGTCGTTCGTCGTGGCCACCCGGGTCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGCCA
CAACCTGGTGAAGGTGTTCGGGCGGGCGGACGAGTCGGCGGCCCAGTTCGCCGAGCAGAACGACAAGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGGTGGCC
GTCGTCGGCGGTCTGCGGGTGGCCTCGGGCTCGCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGCCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCGTCGGCGGAGCGGGTCTTCGAGG
TCCTCGACGCGGAGGAGCAGGAGGCGGACCCGGCGGAGTCGGTCCGTCCCGAGGAACTGCGCGGGCGCGTGGCGCTGGAG
AACGTGTCCTTCCGGTACGACCCGGAGAAGCCCCTCATCGAGGACCTCTCGCTGAAGGTGGAGCCGGGCCACACCGTGGC
CATCGTCGGCCCGACCGGCGCCGGCAAGACGACCCTGGTGAACCTGCTCATGCGGTTCTACGACGTCACGGCCGGCCGGA
TCACCCTGGACGGGGTCGATGTGGCGTCCATGTCCCGGGACGAGCTGAGGTCCGGGATAGGGATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACGATCGCCGACAACATCGCGTACGGGGCCTCGCGGGACGTCACCCGCGGGGAGATCGAGGAGGC
GGCGCGCGCGGCGCACGCCGACCGGTTCATCCGCACGCTGCCCGAGGGCTACGACACGGTGATCGACGACGAGGGATCGG
GGGTCAGCGCGGGTGAGAAGCAGCTCATCACGATCGCCCGCGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAG
GCGACCAGCTCCGTCGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGCCGGACGTCGTT
CGTGATCGCCCACCGCCTGTCGACCATCCGGGACGCGGACACCATCCTCGTGATGGAGGACGGGTCCATCGTGGAGCAGG
GCGCCCACGCGGAGCTGCTGGAGTCCGGCGGGGCGTACGCCCGCCTGTACCAGGCCCAGTTCGCCCAGGCGGTGGCCGAG
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(41-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.291

96.262

0.388