Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT01_RS26685 Genome accession   NZ_CP107976
Coordinates   6269079..6269756 (+) Length   225 a.a.
NCBI ID   WP_328555647.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00358     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6264079..6274756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT01_RS26670 (OHT01_26635) - 6264369..6265064 (+) 696 WP_328555645.1 TerB family tellurite resistance protein -
  OHT01_RS26675 (OHT01_26640) - 6265320..6267419 (+) 2100 WP_328555646.1 MMPL family transporter -
  OHT01_RS26680 (OHT01_26645) - 6267622..6268797 (+) 1176 Protein_5259 histidine kinase -
  OHT01_RS26685 (OHT01_26650) vraR 6269079..6269756 (+) 678 WP_328555647.1 response regulator transcription factor Regulator
  OHT01_RS26690 (OHT01_26655) - 6269937..6271157 (+) 1221 WP_328555648.1 sialidase family protein -
  OHT01_RS26695 (OHT01_26660) - 6271123..6272121 (-) 999 WP_328555649.1 dihydrodipicolinate synthase family protein -
  OHT01_RS26700 (OHT01_26665) - 6272121..6273173 (-) 1053 WP_328558272.1 ABC transporter ATP-binding protein -
  OHT01_RS26705 (OHT01_26670) - 6273218..6273373 (-) 156 WP_328555650.1 hypothetical protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 23769.39 Da        Isoelectric Point: 4.8421

>NTDB_id=650608 OHT01_RS26685 WP_328555647.1 6269079..6269756(+) (vraR) [Streptomyces sp. NBC_00358]
MTIRVVLADDQNLVRAAFAMLVESARDMEVVGQAATGREAVELARAERADLIVMDIRMPDLDGIEATRLIAADESLAGIR
VLVLTTYDTDEHIVEALRAGASGFLVKDTRPAELLDAIRTVAAGDALLSPGPTARLVARFLRAPSVPSLAVGGPEGLSER
EREVLTLVARGLNNTEIAAALGLSPLTAKTHVSRIMGKLGARDRTQLVIVAYESGLVTPGDAGRV

Nucleotide


Download         Length: 678 bp        

>NTDB_id=650608 OHT01_RS26685 WP_328555647.1 6269079..6269756(+) (vraR) [Streptomyces sp. NBC_00358]
ATGACCATTCGCGTCGTCCTCGCCGATGACCAGAACCTCGTGCGGGCCGCGTTCGCCATGCTCGTGGAGTCGGCGCGGGA
CATGGAGGTGGTCGGGCAGGCGGCCACCGGGCGGGAGGCCGTCGAGCTGGCGCGCGCCGAACGGGCCGACCTGATCGTGA
TGGACATCCGCATGCCCGACCTGGACGGCATCGAGGCGACCCGGCTCATCGCGGCCGACGAGAGCCTGGCCGGGATCAGG
GTGCTCGTGCTCACCACGTACGACACCGACGAGCACATCGTGGAGGCGCTGCGCGCGGGCGCCTCCGGCTTCCTGGTGAA
GGACACCCGGCCCGCCGAACTCCTCGACGCGATCCGCACGGTGGCCGCCGGGGACGCGCTGCTCTCACCGGGCCCCACCG
CCCGCCTGGTCGCCCGCTTCCTGCGGGCCCCGTCGGTTCCCTCGCTCGCGGTGGGCGGCCCCGAGGGGCTCTCCGAGCGC
GAGCGCGAAGTGCTCACCCTGGTCGCGCGCGGCCTCAACAACACCGAGATCGCGGCGGCGTTGGGGCTCAGCCCGCTCAC
CGCGAAGACCCATGTCAGCCGCATCATGGGCAAGCTGGGCGCCCGCGACCGCACCCAGCTCGTCATCGTGGCGTACGAGT
CGGGCCTGGTGACCCCGGGAGACGCGGGCCGGGTCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-119)

Bacterial regulatory proteins, luxR family (GerE)

(157-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.249

96.444

0.369