Detailed information NTG0650593

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: OHT01_RS19275
• Genome accession: NZ_CP107976
• Coordinates: 4578645..4581257 (-)
• Length: 870 a.a.
• NCBI ID: WP_328558174.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00358
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4573645..4586257

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHT01_RS19260 (OHT01_19245)	-	4574259..4576256 (-)	1998	WP_328554377.1	hypothetical protein	-
OHT01_RS19265 (OHT01_19250)	-	4576547..4577746 (+)	1200	WP_328554378.1	glycosyltransferase family 39 protein	-
OHT01_RS19270 (OHT01_19255)	-	4577801..4578343 (-)	543	WP_328554379.1	YbjN domain-containing protein	-
OHT01_RS19275 (OHT01_19260)	clpC	4578645..4581257 (-)	2613	WP_328558174.1	ATP-dependent chaperone ClpB	Regulator
OHT01_RS19280 (OHT01_19265)	-	4581389..4581802 (+)	414	WP_328554380.1	TIGR03618 family F420-dependent PPOX class oxidoreductase	-
OHT01_RS19285 (OHT01_19270)	-	4581964..4582299 (-)	336	WP_328554381.1	hypothetical protein	-
OHT01_RS19290 (OHT01_19275)	-	4582296..4582517 (-)	222	WP_328554382.1	hypothetical protein	-
OHT01_RS19295 (OHT01_19280)	-	4582700..4583692 (+)	993	WP_328554383.1	helix-turn-helix transcriptional regulator	-
OHT01_RS19300 (OHT01_19285)	-	4583761..4584843 (-)	1083	WP_328554384.1	helix-turn-helix transcriptional regulator	-
OHT01_RS19305 (OHT01_19290)	-	4585197..4585871 (-)	675	WP_328554385.1	M15 family metallopeptidase	-

Sequence

Protein

• Length: 870 a.a.
• Molecular weight: 95037.62 Da
• Isoelectric Point: 4.7526

>NTDB_id=650593 OHT01_RS19275 WP_328558174.1 4578645..4581257(-) (clpC) [Streptomyces sp. NBC_00358]
MDAELTNRSRDAINAASSRAVKEGHPDLTPAHLLLALLEGQDNENIIDLLAAVDADQASVRAGAERVLASLPSVTGSTVA
PPQPNREVLAVIADAAERAKELGDEFISTEHLLIGIAAKGGAIADVLSQQGASAKKLLDAFQKTRGGRRVTTPDPEGQYK
ALEKFGTDFTAAAREGKLDPVIGRDHEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLKNKRLVS
LDLGAMVAGAKYRGEFEERLKTVLAEIKDSDGQVITFIDELHTVVGAGAGGDSAMDAGNMLKPMLARGELRMVGATTLDE
YRERIEKDPALERRFQQVLVAEPTVEDTIAILRGLKGRYEAHHKVQIADRALVAAASLSDRYITSRFLPDKAIDLVDEAA
SRLRMEIDSSPVEIDELQRVVDRLKMEELAIGKETDAASRERLDKLRRDLADKEEELRGLTARWEKEKQSLNRVGELKEK
LDELRGQAERAQRDGDFDTASKLLYGEIPTLERDLEEASQAEEEAGKDTMVKEEVGPDDIADVVGAWTGIPAGRLLEGET
QKLLRMEEELGRRLIGQTEAVGAVSDAVRRTRAGIADPDRPTGSFLFLGPTGVGKTELAKALADFLFDDERAMVRIDMSE
YGEKHSVARLVGAPPGYIGYEEGGQLTEAVRRRPYSVILLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNTILIL
TSNLGSQFLGGQSLADPLSSEEDRKRQVLDVVRASFKPEFLNRLDDLVVFSALDRAELERIARLQIDRLAKRLAERRLTL
EVTDAALAWLAEEGNDPAYGARPLRRLVQTAIGDRLAKEILAGEVKDGDTVRVDAFGDGLIVGPATGKTL

Nucleotide

• Length: 2613 bp

>NTDB_id=650593 OHT01_RS19275 WP_328558174.1 4578645..4581257(-) (clpC) [Streptomyces sp. NBC_00358]
GTGGACGCCGAGCTGACCAACAGGAGCCGGGACGCGATCAACGCGGCGAGCAGCCGCGCCGTGAAGGAGGGGCACCCGGA
CCTCACCCCCGCCCACCTGCTGCTCGCTCTGCTGGAGGGGCAGGACAACGAGAACATCATCGATCTGCTGGCGGCCGTGG
ACGCCGACCAGGCGTCCGTGCGGGCCGGCGCCGAGCGCGTGCTCGCGAGCCTGCCCAGCGTGACCGGATCCACCGTCGCG
CCCCCGCAGCCCAACCGCGAGGTGCTCGCCGTCATCGCCGACGCCGCCGAGCGGGCCAAGGAGCTCGGCGACGAGTTCAT
CTCCACCGAGCACCTGCTCATCGGGATCGCCGCGAAGGGCGGTGCGATCGCCGACGTACTCTCCCAGCAGGGCGCCAGTG
CGAAGAAGCTGCTGGACGCGTTCCAGAAGACCAGGGGAGGGCGCCGGGTGACGACCCCGGATCCCGAGGGCCAGTACAAG
GCACTCGAAAAATTCGGTACGGACTTCACCGCCGCGGCGCGTGAGGGCAAGCTCGACCCCGTCATCGGCAGGGACCACGA
GATCCGCCGGGTGGTGCAGGTCCTGTCCCGCCGCACGAAGAACAACCCCGTCCTCATCGGCGAGCCCGGCGTCGGCAAGA
CGGCCGTCGTCGAAGGGCTCGCGCAGCGGATCGTGAAGGGCGACGTGCCCGAGTCGCTCAAGAACAAGCGGCTCGTCTCG
CTCGACCTCGGCGCCATGGTCGCCGGGGCGAAGTACCGGGGAGAGTTCGAGGAGCGCCTGAAGACCGTGCTCGCGGAGAT
CAAGGACTCCGACGGGCAGGTCATCACGTTCATCGACGAGCTGCACACCGTCGTGGGGGCCGGCGCGGGCGGCGATTCCG
CCATGGACGCCGGCAACATGCTCAAGCCCATGCTCGCGCGCGGTGAGCTGCGCATGGTCGGCGCCACCACCCTCGACGAG
TACCGCGAGCGGATCGAGAAGGACCCGGCGCTTGAGCGGCGCTTCCAGCAGGTGCTGGTCGCCGAACCCACCGTCGAGGA
CACCATCGCCATCCTGCGCGGGCTCAAGGGCCGCTACGAGGCCCACCACAAGGTCCAGATCGCCGACAGGGCGCTGGTGG
CCGCCGCCTCCCTGTCCGACCGCTACATCACCTCGCGCTTCCTGCCCGACAAGGCCATCGACCTCGTCGACGAGGCGGCC
TCACGGCTGCGCATGGAGATCGACTCCTCCCCGGTCGAGATCGACGAGCTCCAGCGGGTCGTCGACCGGCTGAAGATGGA
GGAGCTGGCGATCGGCAAGGAGACCGACGCCGCCAGCCGGGAGCGCCTGGACAAGCTGCGCCGCGACCTCGCCGACAAGG
AGGAGGAGCTGCGCGGTCTCACCGCCCGCTGGGAGAAGGAGAAGCAGTCCCTGAACCGCGTCGGCGAGCTGAAGGAGAAG
CTCGACGAGCTGCGCGGCCAGGCCGAACGCGCCCAGCGCGACGGTGACTTCGACACCGCCTCCAAGCTGTTGTACGGCGA
GATCCCCACCCTGGAGAGGGACTTGGAGGAAGCGTCGCAGGCCGAGGAGGAGGCCGGCAAGGACACCATGGTCAAGGAGG
AGGTCGGGCCGGACGACATCGCGGACGTCGTCGGCGCCTGGACCGGCATCCCGGCCGGCCGTCTCCTGGAGGGCGAGACG
CAGAAACTCCTGCGCATGGAGGAGGAGTTGGGCCGTCGGCTGATCGGCCAGACCGAGGCCGTGGGGGCGGTGTCCGACGC
CGTGCGGCGCACCCGGGCCGGTATCGCCGACCCGGACCGGCCCACCGGCTCGTTCCTCTTCCTCGGCCCGACGGGTGTCG
GCAAGACCGAACTGGCCAAGGCCCTCGCGGACTTCCTCTTCGACGACGAGCGGGCGATGGTCCGCATCGACATGTCGGAG
TACGGCGAGAAGCACAGCGTGGCGCGGCTGGTCGGCGCGCCGCCCGGGTACATCGGCTACGAGGAGGGCGGCCAGCTCAC
CGAGGCGGTGCGCCGCCGCCCGTACAGCGTGATCCTGCTCGACGAGGTGGAGAAGGCGCACCCCGAGGTCTTCGACATCC
TGCTCCAGGTGCTGGACGACGGGCGCCTGACGGACGGTCAGGGGCGGACGGTCGACTTCCGCAACACCATCCTGATCCTC
ACCTCGAACCTGGGCAGCCAGTTCCTCGGCGGGCAGAGCCTCGCCGATCCGCTGTCCTCCGAGGAGGACAGGAAGCGACA
GGTTCTGGACGTCGTCCGCGCCTCCTTCAAGCCGGAGTTCCTGAACCGGCTGGACGACCTCGTCGTCTTCTCCGCGCTCG
ACCGGGCGGAGCTGGAGCGCATCGCCCGGCTCCAGATCGACCGCCTGGCGAAGCGGCTGGCCGAGCGCCGGCTCACCCTG
GAGGTCACCGACGCGGCACTGGCCTGGCTGGCCGAGGAGGGCAACGATCCGGCGTACGGAGCGCGCCCGCTGCGGCGCCT
CGTCCAGACCGCCATCGGCGACCGGCTGGCCAAGGAGATCCTGGCGGGCGAGGTCAAGGACGGCGACACGGTCCGTGTGG
ACGCCTTCGGCGACGGCCTGATCGTGGGCCCGGCGACGGGCAAGACGCTCTAG

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-146)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (16-68)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-338)

• AAA domain (Cdc48 subfamily) (AAA_2) (600-766)

• AAA lid domain (AAA_lid_9) (344-446)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (773-853)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	44.683	100	0.454
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.049	97.586	0.41
clpC	Lactococcus lactis subsp. cremoris KW2	46.11	79.77	0.368
clpE	Streptococcus mutans UA159	46.46	77.931	0.362