Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   OG996_RS34115 Genome accession   NZ_CP107971
Coordinates   7440945..7443083 (+) Length   712 a.a.
NCBI ID   WP_266512304.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00366     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7435945..7448083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG996_RS34080 (OG996_34085) - 7436373..7436501 (+) 129 WP_266512322.1 hypothetical protein -
  OG996_RS34085 (OG996_34090) - 7436509..7437303 (+) 795 WP_266512320.1 methyltransferase domain-containing protein -
  OG996_RS34090 (OG996_34095) - 7437425..7437853 (+) 429 WP_266512318.1 VOC family protein -
  OG996_RS34095 (OG996_34100) - 7437973..7438161 (-) 189 WP_266512316.1 hypothetical protein -
  OG996_RS34100 (OG996_34105) - 7438282..7438836 (-) 555 WP_266512313.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  OG996_RS34105 (OG996_34110) - 7438883..7439758 (-) 876 WP_266512310.1 glycerophosphodiester phosphodiesterase family protein -
  OG996_RS34110 (OG996_34115) - 7440038..7440904 (+) 867 WP_266512307.1 MHYT domain-containing protein -
  OG996_RS34115 (OG996_34120) uvrB 7440945..7443083 (+) 2139 WP_266512304.1 excinuclease ABC subunit UvrB Machinery gene
  OG996_RS34120 (OG996_34125) - 7443244..7443822 (+) 579 WP_232648053.1 TerD family protein -
  OG996_RS34125 (OG996_34130) - 7443905..7445899 (+) 1995 WP_266512286.1 TerD family protein -
  OG996_RS34130 (OG996_34135) - 7446130..7447131 (+) 1002 WP_266512284.1 TerC/Alx family metal homeostasis membrane protein -
  OG996_RS34135 (OG996_34140) - 7447271..7447570 (+) 300 WP_266520158.1 hypothetical protein -

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 79806.40 Da        Isoelectric Point: 4.8220

>NTDB_id=650534 OG996_RS34115 WP_266512304.1 7440945..7443083(+) (uvrB) [Streptomyces sp. NBC_00366]
MRPVSNIERTVAPFEVVSPYQPSGDQPTAIAELAKRIEAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTP
QEYVDRMVPLRVGDEIDRDQLLRRFVDIQYTRNDTAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEVEALSTLHPLTG
EIISDDQQLYIFPATHYVAGPERLERAANDIEKELGERLAELEKQGKLLEAQRLRMRTTYDLEMLRQIGSCSGVENYSMH
FDGRSPGSPPNTLLDYFPDDFLLVIDESHNTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYL
SATPGKYELSRGDGAVEQIIRPTGLIDPEVVVKPTEGQIDDLVHEIRTRTEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRSGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMEKAIDETNRRREKQVAYNTANGIDPQPLRKKINDIVAQIAREDVDTEQLLGSGYRKLKEGKGAKAPVPALGG
KAAGGAKSAKGKAKETAPTDRPAAELAEQIEEMTARMRAAAADLQFEIAARLRDEVSEMKKELRQMREAGLA

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=650534 OG996_RS34115 WP_266512304.1 7440945..7443083(+) (uvrB) [Streptomyces sp. NBC_00366]
ATGCGGCCCGTTTCCAACATCGAACGCACGGTGGCGCCCTTCGAGGTCGTCAGCCCCTACCAGCCCAGCGGCGACCAGCC
GACGGCCATCGCCGAGCTGGCCAAACGCATCGAGGCAGGCGAGAAGGACGTCGTCCTGCTGGGCGCGACCGGTACCGGCA
AGTCCGCCACCACCGCGTGGATGATCGAGAAGCTCCAGCGCCCCACGCTCGTGATGGCGCCGAACAAGACCCTGGCCGCC
CAGCTGGCGAACGAGTTCAGAGAACTCCTGCCGAACAACGCAGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCCTACGTCCCCCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAGCGCCTGCGCCACT
CCGCGACCAACTCGCTGCTCACCCGCCGTGACGTCATCGTGGTCGCCTCGGTCTCCTGCATCTACGGCCTCGGTACCCCG
CAGGAGTACGTGGACCGCATGGTCCCCCTCAGGGTCGGCGACGAGATCGACCGGGACCAGCTGCTGCGCCGTTTCGTCGA
CATCCAGTACACGCGCAACGACACGGCGTTCACGCGCGGCACCTTCCGCGTCCGCGGCGACACCATCGAGATCTTCCCGG
TTTACGAGGAACTCGCCGTCCGCATCGAGATGTTCGGCGACGAGGTCGAGGCACTCTCCACGCTCCACCCGCTGACCGGC
GAGATCATCAGCGACGACCAGCAGCTGTACATCTTCCCGGCCACCCACTACGTAGCAGGCCCCGAGCGCCTGGAGCGGGC
CGCCAACGACATCGAGAAGGAGCTCGGCGAGCGCCTGGCCGAGCTGGAGAAGCAGGGCAAGCTCCTGGAGGCCCAGCGCC
TGCGGATGCGCACGACGTACGACCTCGAGATGCTCCGCCAGATCGGCTCCTGCTCGGGCGTCGAGAACTACTCGATGCAC
TTCGACGGCCGCTCGCCCGGCTCCCCGCCCAACACACTCCTGGACTACTTCCCGGACGACTTCCTGCTCGTCATCGACGA
GTCACACAACACCGTGCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGCAAGCGCACCCTCGTCGACCACGGCT
TCCGCCTGCCCTCGGCCCTCGACAACCGTCCCCTGAAGTGGGAGGAGTTCCAGGAGCGCATCGGGCAGACGGTCTATCTG
TCGGCGACCCCGGGCAAGTACGAACTCTCACGCGGCGACGGCGCCGTCGAGCAGATCATCCGCCCCACCGGCCTGATCGA
CCCGGAGGTCGTGGTCAAGCCCACCGAGGGGCAGATCGACGACCTGGTGCACGAGATCCGGACGCGTACCGAGAAGGACG
AGCGCGTCCTGGTCACCACCCTCACCAAGAAGATGGCCGAGGACCTCACGGACTACTTCCTGGAGCTCGGCATCCAGGTC
CGCTATCTGCACAGCGACGTCGACACCCTGCGCCGCGTCGAGCTGCTGCGCGAACTGCGCTCCGGCGAGTTCGACGTCCT
GGTCGGCATCAACCTCCTGCGAGAGGGCCTCGACCTGCCCGAGGTGTCCTTGGTGGCCATCCTCGACGCCGACAAGGAGG
GCTTCCTGCGCTCCGGCACGTCCCTGATCCAGACCATCGGCCGCGCGGCGCGCAACGTCTCCGGCCAGGTCCACATGTAC
GCCGACAAGATCACCCCGGCGATGGAGAAGGCCATCGACGAGACCAACCGCCGCCGGGAGAAGCAGGTCGCGTACAACAC
GGCGAACGGCATCGACCCCCAGCCCCTCCGCAAGAAGATCAACGACATCGTCGCGCAGATCGCCCGCGAGGACGTCGACA
CCGAACAGCTGCTCGGCTCCGGCTACCGCAAGCTCAAGGAGGGCAAGGGCGCCAAGGCACCCGTGCCCGCCCTCGGCGGC
AAGGCGGCCGGCGGTGCCAAGTCCGCCAAGGGCAAGGCCAAGGAGACGGCCCCGACCGACCGGCCCGCGGCCGAACTCGC
CGAGCAGATCGAGGAGATGACGGCGCGTATGCGGGCCGCGGCCGCCGACCTCCAGTTCGAGATCGCGGCCCGGCTGCGCG
ACGAGGTCTCCGAGATGAAGAAGGAACTACGTCAGATGAGGGAGGCGGGCCTGGCCTGA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB/uvrC motif (UVR)

(668-701)

Helicase conserved C-terminal domain (Helicase_C)

(441-551)

Type III restriction enzyme, res subunit (ResIII)

(25-145)

UvrB interaction domain (UvrB_inter)

(169-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

58.14

96.629

0.562
  uvrB Streptococcus pneumoniae R6

58.14

96.629

0.562
  uvrB Streptococcus pneumoniae D39

58.14

96.629

0.562