Detailed information NTG0650520

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OG996_RS26690
• Genome accession: NZ_CP107971
• Coordinates: 5790278..5791276 (+)
• Length: 332 a.a.
• NCBI ID: WP_266516034.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00366
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5785278..5796276

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG996_RS26665 (OG996_26660)	-	5785545..5786210 (+)	666	WP_266516047.1	TetR/AcrR family transcriptional regulator	-
OG996_RS26670 (OG996_26665)	-	5786349..5787896 (+)	1548	WP_266583856.1	MFS transporter	-
OG996_RS26675 (OG996_26670)	-	5788005..5788535 (-)	531	WP_266516042.1	MarR family transcriptional regulator	-
OG996_RS26680 (OG996_26675)	-	5788675..5789466 (+)	792	WP_266516039.1	class III extradiol ring-cleavage dioxygenase	-
OG996_RS26685 (OG996_26680)	-	5789564..5790082 (-)	519	WP_266516037.1	GNAT family N-acetyltransferase	-
OG996_RS26690 (OG996_26685)	rpoS	5790278..5791276 (+)	999	WP_266516034.1	sigma-70 family RNA polymerase sigma factor	Regulator
OG996_RS26695 (OG996_26690)	-	5791912..5792535 (+)	624	WP_266842155.1	TetR family transcriptional regulator	-
OG996_RS26700 (OG996_26695)	-	5792915..5793037 (+)	123	WP_266516031.1	hypothetical protein	-
OG996_RS26705 (OG996_26700)	-	5793136..5794101 (-)	966	WP_266516028.1	YafY family protein	-
OG996_RS26710 (OG996_26705)	-	5794164..5795738 (+)	1575	WP_266516026.1	MFS transporter	-
OG996_RS26715 (OG996_26710)	-	5795869..5796069 (+)	201	WP_266516023.1	hypothetical protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37172.96 Da
• Isoelectric Point: 5.0564

>NTDB_id=650520 OG996_RS26690 WP_266516034.1 5790278..5791276(+) (rpoS) [Streptomyces sp. NBC_00366]
MATRAVARRKSATGETADAASSVRAHAGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFARQVLDGDEESKAE
ASREELQALVDDGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAEIAAELDTKPERVIDVLDWARDPVSLNMAVDDEGETQF
GDLLEDTSAVSPEQSVLTLLRSEELDHLIGRLDPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARSTGFEAAA

Nucleotide

• Length: 999 bp

>NTDB_id=650520 OG996_RS26690 WP_266516034.1 5790278..5791276(+) (rpoS) [Streptomyces sp. NBC_00366]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACGGCCGACGCGGCAAGCAGTGTTCGCGCTCACGC
CGGCGAGATCGCCGACCGTGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGCACGCCGCTGCTCGACGCTGCCAAGG
AGGTCGAGCTGTCACAGATCATCGAGGCGGGTGTGTTCGCGCGACAGGTCCTCGACGGAGACGAGGAGTCCAAGGCCGAG
GCCTCCCGCGAGGAGCTTCAGGCCCTGGTCGACGACGGCGAGCGGGCGAAGGACGTCTTCATCCGCTCCAACCTCCGCCT
GGTCGTGGCCGTGGCCCGGCGCTACCCGCGCAGCGGCCTCCCCCTCCTCGACCTGATCCAGGAGGGCAACGCCGGACTGG
TGCGCGCAGTCGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCGATC
ACCCGCTCGATAGCGGACCAGTCGCGCACCATCCGCCTGCCCGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGCCGTGT
GCAGCGCGAGTTCAACCGCGAGCACGGCCGCGACCCGGAGCCCGCGGAGATCGCCGCGGAGCTCGACACGAAGCCGGAGC
GCGTGATCGACGTCCTGGACTGGGCCCGCGACCCGGTCTCCCTGAACATGGCCGTGGACGACGAGGGCGAGACCCAGTTC
GGCGACCTGCTGGAGGACACCTCGGCGGTCTCCCCGGAGCAGTCCGTCCTGACCCTGCTGCGCAGCGAGGAGCTCGACCA
CCTCATCGGCCGCCTCGACCCGCGCACGGCCTCCATCATCAAGATGCGCTACGGCATCGACGACGGCCGCGAGCGCACCC
TGACGGAGGTCGGCAAGGAACACGGCCTGACCCGCGAGCGCATCCGCCAGATCGAGAAGCACGCCCTGCTGGAGCTTAAG
AAGCTGGCCCGGTCCACGGGCTTCGAGGCGGCGGCCTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-255)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (34-67)

• Sigma-70, region 4 (Sigma70_r4) (269-321)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.134	90.06	0.361