Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG996_RS16475 Genome accession   NZ_CP107971
Coordinates   3633069..3633683 (-) Length   204 a.a.
NCBI ID   WP_266521082.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00366     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3628069..3638683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG996_RS16450 (OG996_16450) - 3628926..3629384 (+) 459 WP_266521092.1 ATP-binding protein -
  OG996_RS16455 (OG996_16455) - 3629468..3630583 (-) 1116 WP_266589754.1 bifunctional succinyldiaminopimelate transaminase/glutamate-prephenate aminotransferase -
  OG996_RS16460 (OG996_16460) fdxA 3630703..3631023 (-) 321 WP_030929316.1 ferredoxin -
  OG996_RS16465 (OG996_16465) - 3631164..3632171 (+) 1008 WP_266521085.1 GNAT family N-acetyltransferase -
  OG996_RS16470 (OG996_16470) - 3632204..3633055 (+) 852 WP_266521083.1 transglutaminase-like domain-containing protein -
  OG996_RS16475 (OG996_16475) vraR 3633069..3633683 (-) 615 WP_266521082.1 response regulator transcription factor Regulator
  OG996_RS16480 (OG996_16480) - 3633680..3634870 (-) 1191 WP_266523681.1 histidine kinase -
  OG996_RS16485 (OG996_16485) - 3634876..3635625 (-) 750 WP_266589748.1 ABC transporter permease -
  OG996_RS16490 (OG996_16490) - 3635619..3636548 (-) 930 WP_266521080.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 21458.69 Da        Isoelectric Point: 4.7098

>NTDB_id=650495 OG996_RS16475 WP_266521082.1 3633069..3633683(-) (vraR) [Streptomyces sp. NBC_00366]
MSPTIKVLLAEDQSMVREALAALLGLEDDIEVVAQVARGDEVVAAAREYDVDVALLDIEMPGCTGIEAAALVHKELPAVK
VVVLTTFGRPGYLRSAMEAGADAFLVKDAPAAQLAEAVRKVLAGERVIDPTLAAAALAGGANPLTDREREILRAAADGST
NAELAAALHLSQGTVRNYLSTAIQKLAVRNRAEAVRIAREKGWL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=650495 OG996_RS16475 WP_266521082.1 3633069..3633683(-) (vraR) [Streptomyces sp. NBC_00366]
ATGAGCCCTACGATCAAGGTTCTGCTCGCCGAGGACCAGTCGATGGTCCGCGAGGCGCTGGCCGCCCTCCTCGGTCTTGA
GGACGACATCGAGGTCGTCGCCCAAGTGGCGCGCGGCGACGAGGTGGTGGCGGCCGCCCGCGAGTACGACGTGGATGTGG
CCCTCCTCGACATCGAGATGCCGGGCTGCACCGGTATCGAGGCGGCGGCCCTGGTCCACAAGGAACTCCCGGCGGTGAAG
GTGGTCGTCCTCACCACCTTCGGCCGTCCCGGCTACCTCCGCAGCGCCATGGAAGCGGGCGCCGACGCCTTCCTGGTCAA
GGACGCCCCGGCCGCCCAACTGGCAGAGGCGGTACGCAAGGTGCTGGCGGGAGAACGGGTCATCGACCCCACCCTCGCCG
CCGCGGCCCTGGCAGGGGGCGCGAACCCGCTGACCGACCGCGAACGGGAGATCCTGCGCGCGGCGGCCGACGGTTCCACC
AACGCGGAACTGGCCGCGGCGCTGCATCTGTCGCAGGGCACGGTCCGCAACTACCTCTCGACGGCGATCCAGAAACTGGC
GGTACGCAACAGGGCCGAGGCGGTACGCATCGCGAGGGAAAAGGGCTGGCTCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(143-198)

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.715

100

0.373