Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG996_RS01940 Genome accession   NZ_CP107971
Coordinates   413103..413774 (-) Length   223 a.a.
NCBI ID   WP_266524591.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00366     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 408103..418774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG996_RS01915 (OG996_01925) - 408426..409700 (-) 1275 WP_328549529.1 MFS transporter -
  OG996_RS01920 (OG996_01930) - 409836..410597 (+) 762 WP_328549530.1 transposase -
  OG996_RS01925 (OG996_01935) - 410739..411503 (-) 765 WP_266524593.1 hypothetical protein -
  OG996_RS01930 (OG996_01940) - 412051..412302 (-) 252 Protein_385 AraC family transcriptional regulator -
  OG996_RS01940 (OG996_01950) dinR/lexA 413103..413774 (-) 672 WP_266524591.1 transcriptional repressor LexA Regulator
  OG996_RS01945 (OG996_01955) - 414110..414859 (+) 750 WP_266518740.1 transposase -
  OG996_RS01950 (OG996_01960) - 414894..415112 (-) 219 WP_266524589.1 hypothetical protein -
  OG996_RS01955 (OG996_01965) - 415407..415760 (-) 354 WP_266593786.1 VOC family protein -
  OG996_RS01960 (OG996_01970) - 416098..416556 (+) 459 WP_266524585.1 SRPBCC family protein -
  OG996_RS01965 (OG996_01975) - 416652..417464 (-) 813 WP_266593782.1 family 1 encapsulin nanocompartment shell protein -
  OG996_RS01970 (OG996_01980) - 417461..418522 (-) 1062 WP_328432635.1 Dyp-type peroxidase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24278.62 Da        Isoelectric Point: 4.9902

>NTDB_id=650471 OG996_RS01940 WP_266524591.1 413103..413774(-) (dinR/lexA) [Streptomyces sp. NBC_00366]
MENTTPARRGRPQGPGTAEGELTGRQAAIVRYITETVDRQGYPPSMREIGKAVDLNSTSSVAYQLLALERKGILYRDPHR
PRAYRVRPSWAPDLDGKAVEQVDVPLVGRIAAGAPLLADEMVEDVYTLPRQVVGDGEVFALTVSGDSMVDAAICDGDIVA
VKRQDSADHGDIVAALLEDEATVKVLRRQDGQVWLMPRNPAYEPIRGDEARILGKVVGVLRVL

Nucleotide


Download         Length: 672 bp        

>NTDB_id=650471 OG996_RS01940 WP_266524591.1 413103..413774(-) (dinR/lexA) [Streptomyces sp. NBC_00366]
ATGGAGAACACCACGCCCGCCCGCCGGGGCCGACCTCAAGGCCCCGGCACTGCCGAAGGAGAGCTGACGGGCCGCCAGGC
GGCCATCGTCCGCTACATCACGGAGACGGTCGACCGACAGGGATACCCGCCGTCGATGCGGGAGATCGGCAAGGCCGTAG
ACCTCAACAGCACCTCCTCGGTCGCCTACCAACTGCTCGCGCTCGAGCGCAAAGGCATCCTCTATCGCGACCCGCACCGG
CCTCGCGCCTACCGGGTCAGGCCGTCATGGGCGCCTGACCTCGATGGCAAAGCCGTGGAACAGGTCGATGTGCCGCTCGT
CGGCCGGATCGCCGCCGGCGCGCCCCTGCTCGCCGACGAGATGGTCGAGGACGTCTACACCCTGCCCCGTCAGGTCGTGG
GCGACGGCGAGGTGTTCGCGCTGACGGTGTCCGGCGACAGCATGGTCGACGCGGCGATCTGCGACGGAGACATCGTCGCC
GTCAAACGACAGGACAGCGCCGATCACGGCGACATCGTCGCCGCGCTCCTTGAGGACGAGGCCACTGTCAAAGTACTGCG
CCGGCAGGACGGGCAGGTGTGGCTCATGCCCCGCAATCCGGCCTACGAGCCGATCCGCGGCGACGAGGCGCGGATCCTCG
GCAAGGTCGTCGGCGTTCTCCGCGTTCTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(105-217)

LexA DNA binding domain (LexA_DNA_bind)

(21-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.366

91.928

0.417