Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   OHS57_RS36685 Genome accession   NZ_CP107968
Coordinates   8392360..8394582 (+) Length   740 a.a.
NCBI ID   WP_328584817.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00370     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8387360..8399582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS57_RS36675 (OHS57_36680) - 8388755..8389867 (-) 1113 WP_328584816.1 polyprenyl synthetase family protein -
  OHS57_RS36680 (OHS57_36685) tal 8390623..8391732 (+) 1110 Protein_7247 transaldolase -
  OHS57_RS36685 (OHS57_36690) recP/tkt 8392360..8394582 (+) 2223 WP_328584817.1 transketolase Machinery gene
  OHS57_RS36690 (OHS57_36695) - 8394863..8395063 (+) 201 WP_328584818.1 hypothetical protein -
  OHS57_RS36695 (OHS57_36700) - 8395251..8398193 (-) 2943 WP_328584819.1 right-handed parallel beta-helix repeat-containing protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 79177.23 Da        Isoelectric Point: 4.7247

>NTDB_id=650466 OHS57_RS36685 WP_328584817.1 8392360..8394582(+) (recP/tkt) [Streptomyces sp. NBC_00370]
MANGTSGNGSAVAHERGVSSPVSDRVGWDAVDVRAVDTVRLLAADAVQKVGNGHPGTAMSLAPLGYLLFQKVMRHDPNDD
RWLGRDRFVLSCGHSSLTLYIQLYLSGYGLELPDLQAYRTWGSATPGHPEHRHTPGVEITTGPLGQGLASAVGMAMAARR
ERGLLDPDAAPGASPFDHHVYVIASDGDLMEGVTSEASSLAGHQELGNLVMFYDSNNISIEDDTNVSFSEDVPARYAAYG
WHVQTVDWTRTGDYVEDVDALLAAIEAAKAETGRPSLIMLRTLIGWPAPTKQNTGKAHGSALGDDEVAATKELLGFDPAR
TFVVEDEVLARTREASDRGHDVHARWQDQFTAWREANPARAALLDRLQAQELPEGWADTLPQFPADSKGMATRKASAAVL
NAVADVLPELWGGSADLAESNNTTMEGEPSFLPADRQTKEWKGDPYGRTLHFGIREHAMGAVLNGIALQSLTRPYGGTFL
TFSDYMRPAVRLAALMQLPATYVWTHDSIGLGEDGPTHQPVEHLAALRAIPGLDVVRPADANETAACWRTVLEHTDRPAG
LILTRQNLPVLDRSSGEFAAASNAARGGYTLAESEGSSTPDVILVATGSEVQIALDARALLASDGLAVRVVSMPCREWFA
AQPLAYQDEVLPPEVRARVSVEAAVGQGWRDVVGDAGRIISLEHYGASADYQRLYTEFGITAEAVAAAARDSIQDATEPP
RPGGRQQTAAPTSGGTGDRP

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=650466 OHS57_RS36685 WP_328584817.1 8392360..8394582(+) (recP/tkt) [Streptomyces sp. NBC_00370]
ATGGCGAACGGGACATCGGGGAACGGGTCTGCCGTAGCACACGAGCGTGGAGTGAGTTCGCCCGTGAGTGACCGGGTGGG
CTGGGACGCGGTGGATGTACGGGCGGTGGACACGGTTCGGCTGCTTGCCGCCGACGCCGTCCAGAAGGTCGGCAACGGTC
ACCCCGGTACGGCGATGAGTCTGGCGCCCCTGGGCTACCTGTTGTTTCAGAAGGTGATGCGCCATGACCCGAATGACGAC
CGGTGGCTGGGGCGCGACCGCTTCGTGCTGTCGTGCGGTCATTCCAGCCTGACGCTGTACATCCAGCTCTATCTGTCCGG
GTACGGTCTTGAACTGCCGGACCTGCAGGCATACCGCACGTGGGGGTCGGCAACGCCCGGCCATCCCGAGCACCGCCACA
CCCCTGGGGTCGAGATCACCACCGGACCGCTGGGGCAGGGCCTCGCCAGCGCCGTGGGTATGGCGATGGCCGCGCGCCGC
GAGCGCGGCCTCCTCGATCCGGACGCCGCGCCCGGCGCGTCCCCCTTCGACCACCACGTCTACGTCATCGCCTCCGACGG
AGACCTGATGGAGGGCGTCACCTCCGAGGCGAGTTCCCTCGCCGGACACCAGGAACTCGGCAACCTGGTGATGTTCTACG
ACTCCAACAACATCTCCATCGAGGACGACACCAACGTCTCGTTCAGCGAAGACGTACCGGCCCGCTACGCCGCCTACGGC
TGGCACGTGCAGACCGTGGACTGGACCCGCACCGGCGACTACGTCGAAGACGTGGACGCGCTGTTGGCCGCGATCGAGGC
GGCCAAGGCGGAGACCGGCCGCCCCTCGCTGATCATGCTGCGTACCCTGATCGGCTGGCCCGCCCCCACCAAGCAGAACA
CCGGAAAGGCGCATGGCTCGGCGCTGGGCGACGACGAAGTCGCCGCGACGAAGGAGCTGTTGGGCTTCGACCCGGCGCGC
ACGTTCGTCGTCGAGGACGAGGTCCTGGCGCGGACTCGCGAGGCGTCGGATCGCGGGCACGATGTGCACGCCCGATGGCA
GGACCAGTTCACCGCCTGGCGCGAGGCCAACCCAGCGCGCGCTGCGCTGCTCGACCGGCTGCAGGCACAGGAGTTGCCGG
AAGGGTGGGCCGATACGCTGCCCCAATTCCCGGCCGACTCCAAGGGGATGGCCACCCGCAAGGCATCCGCAGCGGTGCTC
AACGCCGTCGCGGATGTCCTGCCTGAGCTATGGGGAGGATCGGCCGACCTCGCCGAGAGCAACAACACCACGATGGAGGG
CGAGCCGTCCTTCCTGCCGGCCGACCGGCAGACCAAGGAGTGGAAGGGCGACCCGTACGGGCGCACCCTGCACTTCGGCA
TCCGCGAGCACGCGATGGGCGCGGTCCTCAACGGCATCGCGCTGCAAAGCCTGACACGGCCGTACGGCGGCACGTTCCTC
ACCTTCTCGGACTACATGCGCCCCGCGGTCCGGCTGGCAGCCCTGATGCAGCTGCCCGCGACGTACGTGTGGACCCACGA
CTCGATCGGCCTGGGCGAGGACGGCCCGACGCATCAGCCCGTCGAGCACCTCGCCGCACTGCGCGCCATCCCGGGCCTGG
ATGTCGTACGGCCCGCTGACGCGAATGAGACCGCCGCCTGCTGGCGCACCGTTCTGGAGCACACCGACCGGCCCGCCGGG
CTGATCCTCACCCGGCAGAACCTGCCCGTGCTGGACCGGAGCAGCGGGGAGTTCGCCGCCGCGTCGAACGCGGCCCGCGG
CGGGTACACCCTTGCCGAAAGCGAGGGGAGTTCGACACCGGACGTCATCCTCGTCGCGACGGGCTCGGAGGTGCAGATCG
CCCTGGACGCCCGTGCCCTGCTGGCATCGGACGGTCTGGCGGTGCGAGTGGTGTCCATGCCGTGCCGGGAGTGGTTCGCC
GCCCAACCACTGGCTTACCAGGATGAAGTCCTGCCGCCCGAGGTCCGGGCTCGGGTCAGTGTCGAGGCCGCCGTCGGCCA
GGGCTGGCGCGACGTGGTCGGAGACGCGGGGCGGATCATCAGCCTTGAACACTACGGCGCTTCAGCGGACTACCAGCGGC
TCTACACCGAATTCGGCATCACCGCCGAGGCGGTGGCGGCCGCCGCCCGCGACAGCATCCAAGACGCCACTGAGCCCCCG
CGCCCGGGCGGCCGTCAGCAGACTGCCGCCCCCACGAGCGGAGGCACGGGGGACCGTCCGTGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(32-373)

Transketolase, pyrimidine binding domain (Transket_pyr)

(389-569)

Transketolase, C-terminal domain (Transketolase_C)

(599-705)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

43.814

92.838

0.407