Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHS57_RS32825 Genome accession   NZ_CP107968
Coordinates   7409726..7410751 (-) Length   341 a.a.
NCBI ID   WP_328584257.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00370     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7404726..7415751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS57_RS32805 (OHS57_32815) - 7405336..7406052 (+) 717 WP_328585221.1 (2Fe-2S)-binding protein -
  OHS57_RS32810 (OHS57_32820) glgA 7406097..7407278 (+) 1182 WP_328584255.1 glycogen synthase -
  OHS57_RS32815 (OHS57_32825) glgC 7407313..7408530 (+) 1218 WP_041993596.1 glucose-1-phosphate adenylyltransferase -
  OHS57_RS32820 (OHS57_32830) - 7408871..7409725 (+) 855 WP_328584256.1 alpha/beta hydrolase -
  OHS57_RS32825 (OHS57_32835) cytR 7409726..7410751 (-) 1026 WP_328584257.1 LacI family DNA-binding transcriptional regulator Regulator
  OHS57_RS32830 (OHS57_32840) - 7410999..7412492 (+) 1494 WP_328584258.1 SDR family NAD(P)-dependent oxidoreductase -
  OHS57_RS32835 (OHS57_32845) - 7412735..7412905 (+) 171 WP_198533350.1 hypothetical protein -
  OHS57_RS32840 (OHS57_32850) - 7413057..7414304 (+) 1248 WP_328584259.1 EfeM/EfeO family lipoprotein -
  OHS57_RS32845 (OHS57_32855) efeB 7414301..7415584 (+) 1284 WP_328584260.1 iron uptake transporter deferrochelatase/peroxidase subunit -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36794.72 Da        Isoelectric Point: 5.5985

>NTDB_id=650458 OHS57_RS32825 WP_328584257.1 7409726..7410751(-) (cytR) [Streptomyces sp. NBC_00370]
MSVSLKDVAEHAGVSIKTVSNVVNNYRHVTPAMRTKVQHAIDELGYRPNLTARHLRKGRTGIIALAVPELGNPYFAELAG
AVIDAAAEHDYTVLLDHTSGRREQEILVSQGFRARVIDGLILSPIELEPEDLLGRDHDAPLVLLGEREYGLPYDHIAIDN
VAAARAAVRHLLDLGRSRIAFLGARTDRVNEPSHLRVDGWRAELTAAGLPAPDALVAATGGWDHADGAAAMARLLDSGEL
PDAVFAYNDLIAIGAMRVLSERGLRIPEDVAVVGFDDITEGRYGLVTLTTISPDKQTIARLAVRSVVEGLLGTDEGTGPG
GGRELRAEFRLVERESTLGRR

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=650458 OHS57_RS32825 WP_328584257.1 7409726..7410751(-) (cytR) [Streptomyces sp. NBC_00370]
GTGAGCGTCAGCCTCAAGGACGTCGCGGAACACGCGGGCGTCTCCATCAAGACCGTCTCGAACGTGGTCAACAACTACCG
GCACGTCACGCCGGCGATGCGGACCAAGGTCCAGCACGCCATCGACGAGTTGGGCTACCGGCCGAACCTGACGGCCCGCC
ATCTGCGCAAGGGCCGCACCGGCATCATCGCGCTGGCCGTCCCCGAGCTGGGCAACCCGTACTTCGCCGAGCTGGCGGGC
GCGGTCATCGACGCGGCGGCCGAGCACGACTACACCGTGCTGCTCGACCACACGAGCGGCAGACGCGAACAGGAGATCCT
GGTCAGCCAGGGGTTCCGGGCCCGGGTCATCGACGGGCTGATCCTCAGCCCCATCGAGCTGGAGCCCGAGGACCTGCTCG
GCCGCGACCACGACGCGCCGCTGGTGCTGCTCGGCGAGCGGGAGTACGGCCTGCCCTACGACCACATCGCGATCGACAAC
GTCGCGGCGGCCCGCGCGGCCGTGCGCCATCTGCTGGATCTCGGCCGGTCCAGGATCGCCTTCCTCGGCGCCCGTACCGA
CCGGGTCAACGAGCCCTCCCACCTGCGGGTGGACGGCTGGCGCGCCGAGCTGACGGCGGCCGGGCTGCCCGCCCCCGACG
CGCTGGTGGCCGCGACGGGCGGCTGGGACCACGCGGACGGCGCGGCGGCGATGGCCCGGCTGCTGGACTCGGGCGAACTG
CCCGACGCCGTCTTCGCGTACAACGACCTGATCGCCATCGGCGCGATGCGGGTGCTCTCCGAGCGCGGGCTGCGGATCCC
CGAGGACGTCGCCGTGGTGGGCTTCGACGACATCACCGAGGGCCGCTACGGTCTGGTCACGCTGACCACAATCTCCCCGG
ACAAGCAGACGATCGCGCGGCTCGCCGTGCGCTCGGTCGTGGAGGGGCTGCTCGGCACGGACGAGGGGACGGGGCCCGGC
GGCGGGCGGGAGCTGCGCGCCGAGTTCCGGCTGGTGGAGCGGGAGAGCACGCTCGGCAGACGCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-337)

Bacterial regulatory proteins, lacI family (LacI)

(4-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.364

100

0.364