Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHS57_RS28365 Genome accession   NZ_CP107968
Coordinates   6337315..6338100 (-) Length   261 a.a.
NCBI ID   WP_041983459.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00370     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6332315..6343100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS57_RS28350 (OHS57_28360) - 6332591..6333301 (+) 711 WP_328583716.1 GNAT family N-acetyltransferase -
  OHS57_RS28355 (OHS57_28365) - 6333386..6335200 (+) 1815 WP_041983463.1 IucA/IucC family siderophore biosynthesis protein -
  OHS57_RS28360 (OHS57_28370) - 6335254..6337224 (+) 1971 WP_041983461.1 ATP-dependent DNA helicase -
  OHS57_RS28365 (OHS57_28375) dinR/lexA 6337315..6338100 (-) 786 WP_041983459.1 transcriptional repressor LexA Regulator
  OHS57_RS28370 (OHS57_28380) nrdR 6338558..6339067 (+) 510 WP_041983456.1 transcriptional regulator NrdR -
  OHS57_RS28375 (OHS57_28385) - 6339221..6342136 (+) 2916 WP_328583717.1 vitamin B12-dependent ribonucleotide reductase -
  OHS57_RS28380 (OHS57_28390) - 6342245..6342772 (-) 528 WP_328583718.1 TerD family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28267.98 Da        Isoelectric Point: 7.4238

>NTDB_id=650446 OHS57_RS28365 WP_041983459.1 6337315..6338100(-) (dinR/lexA) [Streptomyces sp. NBC_00370]
MTTTADSATITAQDRSQSRLEPVHAMNDAVTNPDGAKPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQQTDTTGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFRREDGHVWLLPHNAAY
QPIPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=650446 OHS57_RS28365 WP_041983459.1 6337315..6338100(-) (dinR/lexA) [Streptomyces sp. NBC_00370]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACGCAGTCACGAACCCGGACGGCGCGAAGCCCGCGCGCTCGCTGCCCGGACGACCTCCTGGAATCAGGGCGGACAGCT
CCGGTCTCACCGACCGGCAGCGCAGGGTCATCGAGGTCATCCGCGACTCCGTGCAGCGGCGCGGATACCCGCCGTCGATG
CGGGAGATCGGTCAAGCGGTCGGCCTTTCGAGCACGTCGTCGGTGGCCCATCAGCTGATGGCCCTGGAGCGCAAGGGCTT
CCTGCGCCGCGACCCGCACCGGCCCCGGGCGTACGAGGTCCGTGGCTCCGACCAGCCGAGCACCCAGCAGACCGATACGA
CGGGCAAGCCGGCCGCTTCGTACGTGCCGCTGGTCGGCCGGATCGCGGCCGGCGGACCGATCCTCGCCGAGGAGTCCGTC
GAGGACGTCTTCCCGCTCCCCCGCCAACTGGTGGGTGACGGCGAGCTGTTCGTCCTGAAGGTCGTCGGTGACTCGATGAT
CGAGGCGGCCATCTGTGACGGTGACTGGGTGACGGTCCGCCGCCAGCCCGTCGCCGAGAACGGCGACATCGTCGCGGCGA
TGCTGGAGGGCGAGGCCACGGTCAAGCGCTTCCGCCGCGAGGACGGCCATGTCTGGCTGCTCCCGCACAACGCCGCGTAC
CAGCCGATCCCCGGCGACGACGCGACCATCCTCGGCAAGGTGGTGGCGGTCCTGCGCCGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(143-255)

LexA DNA binding domain (LexA_DNA_bind)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

81.226

0.375