Detailed information    

insolico Bioinformatically predicted

Overview

Name   MMJJ_RS05685   Type   Machinery gene
Locus tag   MMKA1_RS02950 Genome accession   NZ_AP011526
Coordinates   563872..564093 (-) Length   73 a.a.
NCBI ID   WP_013999115.1    Uniprot ID   G0H4L8
Organism   Methanococcus maripaludis KA1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 558872..569093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMKA1_RS02925 (MMKA1_05680) - 560029..560733 (-) 705 WP_119720742.1 ABC transporter ATP-binding protein -
  MMKA1_RS02930 (MMKA1_05690) - 560928..561503 (-) 576 WP_162859744.1 hypothetical protein -
  MMKA1_RS02935 (MMKA1_05700) - 561544..562005 (-) 462 WP_011170469.1 hypothetical protein -
  MMKA1_RS02940 (MMKA1_05710) - 562511..563236 (+) 726 WP_119720744.1 hypothetical protein -
  MMKA1_RS02945 (MMKA1_05720) - 563250..563870 (+) 621 WP_013999116.1 helix-turn-helix domain-containing protein -
  MMKA1_RS02950 (MMKA1_05730) MMJJ_RS05685 563872..564093 (-) 222 WP_013999115.1 class III signal peptide-containing protein Machinery gene
  MMKA1_RS02955 (MMKA1_05740) - 564515..566173 (-) 1659 WP_146778079.1 SulP family inorganic anion transporter -
  MMKA1_RS02960 (MMKA1_05750) - 566405..567022 (+) 618 WP_119720746.1 nucleotidyltransferase domain-containing protein -
  MMKA1_RS02965 (MMKA1_05760) - 567009..567518 (+) 510 WP_011170475.1 HEPN domain-containing protein -

Sequence

Protein


Download         Length: 73 a.a.        Molecular weight: 7738.91 Da        Isoelectric Point: 7.9903

>NTDB_id=65040 MMKA1_RS02950 WP_013999115.1 563872..564093(-) (MMJJ_RS05685) [Methanococcus maripaludis KA1]
MLKKLYSKKGQVSMEIGILVASAVAVSAIASYFYAVNVKYSDTHAGETAKNTSNALINVTENVCGNISEITIP

Nucleotide


Download         Length: 222 bp        

>NTDB_id=65040 MMKA1_RS02950 WP_013999115.1 563872..564093(-) (MMJJ_RS05685) [Methanococcus maripaludis KA1]
ATGCTTAAAAAATTATATTCAAAAAAAGGACAGGTTTCAATGGAAATAGGGATCTTGGTTGCGTCCGCAGTTGCAGTTTC
AGCAATTGCAAGCTATTTTTATGCAGTAAATGTTAAATATTCAGATACCCATGCTGGTGAAACTGCAAAAAATACAAGTA
ATGCCCTTATAAATGTTACAGAAAATGTTTGTGGCAATATTTCTGAAATAACTATTCCCTAA

Domains

Predicted by InterproScan.

Class III signal peptide (Class_IIIsignal)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G0H4L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  MMJJ_RS05685 Methanococcus maripaludis strain DSM 2067

56.944

98.63

0.562
  epdE Methanococcus maripaludis strain DSM 2067

44.776

91.781

0.411

Multiple sequence alignment