Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   OHS57_RS07650 Genome accession   NZ_CP107968
Coordinates   1791485..1793416 (+) Length   643 a.a.
NCBI ID   WP_328581456.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00370     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1786485..1798416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS57_RS07625 (OHS57_07640) rox 1787162..1788586 (+) 1425 WP_328581451.1 rifampin monooxygenase -
  OHS57_RS07630 (OHS57_07645) - 1788779..1789132 (+) 354 WP_328581452.1 YciI family protein -
  OHS57_RS07635 (OHS57_07650) - 1789216..1790457 (+) 1242 WP_328581453.1 RNA polymerase sigma factor -
  OHS57_RS07640 (OHS57_07655) - 1790472..1790705 (-) 234 WP_328581454.1 hypothetical protein -
  OHS57_RS07645 (OHS57_07660) - 1790722..1791312 (-) 591 WP_328581455.1 alpha/beta hydrolase -
  OHS57_RS07650 (OHS57_07665) recQ 1791485..1793416 (+) 1932 WP_328581456.1 DNA helicase RecQ Machinery gene
  OHS57_RS07655 (OHS57_07670) - 1793451..1794026 (-) 576 WP_041996824.1 histidine phosphatase family protein -
  OHS57_RS07660 (OHS57_07675) - 1794154..1795587 (-) 1434 WP_328581457.1 PLP-dependent aminotransferase family protein -
  OHS57_RS07665 (OHS57_07680) - 1795586..1796497 (+) 912 WP_328581458.1 DMT family transporter -
  OHS57_RS07670 (OHS57_07685) - 1796514..1797659 (-) 1146 WP_328581459.1 XdhC/CoxI family protein -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69960.41 Da        Isoelectric Point: 5.5568

>NTDB_id=650396 OHS57_RS07650 WP_328581456.1 1791485..1793416(+) (recQ) [Streptomyces sp. NBC_00370]
MSAPDTGPEAPEAPGPSPAPDETSEALRVLHRVFGYDSFRGSQQEIIDHVVDGGDALVLMPTGGGKSLCYQIPALVRKGV
GVVVSPLIALMQDQVDALRALGVRAGFLNSSQDLDERRLVEAEFLAGELDLLYLAPERLRVDATVRLLERGTISLFAIDE
AHCVAQWGHDFRPDYLALSALHERWPDVPRIALTATATEATHTEIASRLKLQDARHFVASFDRPNIQYRVVPKDDPKRQL
LQLLRAEHPGDAGIVYCLSRASVDRTAEFLVKNGVDALPYHAGLDARTRATNQSRFLREDGLVMVATIAFGMGIDKPDVR
FVAHLDLPKSVEGYYQETGRAGRDGLPSTAWLAYGLQDVVQQRKMIDTSEGDAAHRRMLSAHVDAMLALCETVECRRRQL
LAYFGQQSAGETCGNCDTCLTPPESYDGTVPAQKLLSTVVRLKRERNQKFGAGQITDILLGKKTAKVIQFDHDALSVFGI
GTELREAEWRSVARQLLAQGLIAVEGEYGTLVLTDDSGEVLGGRRPVVLRREPEKAAKAARAAREKTPKQRAAPVDLPAE
AVPVFESLRAWRGATAKEQGVPAYVIFHDATLREIAVLSPSTLDELGTVNGVGENKLAKYGQQLLDTLGAPGGEPDGPDP
EAG

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=650396 OHS57_RS07650 WP_328581456.1 1791485..1793416(+) (recQ) [Streptomyces sp. NBC_00370]
ATGAGCGCTCCCGACACCGGTCCAGAAGCACCCGAGGCACCCGGTCCTTCCCCGGCGCCCGACGAGACGAGCGAGGCACT
GCGGGTCCTGCACCGGGTCTTCGGCTACGACTCCTTCCGGGGCAGCCAGCAGGAGATCATCGACCATGTGGTCGACGGCG
GTGACGCGCTCGTGCTCATGCCGACCGGCGGCGGCAAGTCGCTCTGCTACCAGATCCCCGCGCTGGTCCGTAAGGGCGTC
GGTGTGGTCGTCTCGCCGCTCATCGCGCTCATGCAGGACCAGGTCGACGCGCTCAGGGCGCTCGGGGTGCGCGCCGGCTT
CCTGAACTCCAGCCAGGATCTCGACGAACGGCGGCTGGTGGAGGCCGAGTTCCTCGCGGGCGAGCTGGACCTGCTCTATC
TGGCCCCTGAGCGGCTGCGGGTCGACGCGACCGTACGGCTGCTGGAGCGCGGCACGATCTCGCTGTTCGCCATCGACGAG
GCGCACTGCGTGGCGCAGTGGGGGCACGACTTCCGGCCCGACTACCTCGCCCTGTCCGCGCTGCACGAGCGCTGGCCCGA
CGTGCCGCGTATCGCGCTGACCGCGACGGCGACCGAGGCCACGCACACGGAGATCGCCTCGCGGCTGAAGCTCCAGGACG
CCCGGCACTTCGTCGCCAGCTTCGACCGGCCCAACATCCAGTACCGCGTCGTGCCGAAGGACGACCCGAAGCGCCAGCTG
CTGCAGCTGCTGCGCGCCGAGCACCCCGGCGACGCGGGGATCGTCTACTGCCTGTCCCGCGCCTCGGTGGACAGGACCGC
CGAGTTCCTGGTGAAGAACGGGGTCGACGCGCTGCCGTACCACGCGGGTCTCGACGCCCGTACCCGCGCCACAAACCAGT
CGCGCTTCCTGCGCGAGGACGGTCTGGTGATGGTCGCGACGATCGCCTTCGGGATGGGCATCGACAAGCCGGACGTACGG
TTCGTCGCCCACCTCGACCTGCCGAAGTCCGTCGAGGGGTACTACCAGGAGACGGGCCGTGCCGGGCGTGACGGGCTGCC
GTCCACGGCCTGGCTGGCGTACGGCCTCCAGGACGTGGTCCAGCAGCGGAAGATGATCGACACGTCCGAGGGCGACGCCG
CCCACCGGCGGATGCTGAGCGCCCATGTCGACGCGATGCTCGCGCTGTGCGAGACCGTCGAGTGCCGCAGGCGGCAGCTG
CTGGCCTACTTCGGCCAGCAGAGCGCGGGCGAGACCTGCGGCAACTGCGACACGTGTCTGACCCCGCCGGAGTCGTACGA
CGGGACGGTGCCGGCGCAGAAGTTGCTGTCGACGGTGGTGCGGCTGAAGCGGGAGCGCAACCAGAAGTTCGGCGCGGGGC
AGATCACCGACATCCTGCTCGGCAAGAAGACGGCGAAGGTCATCCAGTTCGACCATGACGCGCTCAGCGTCTTCGGCATC
GGCACGGAGCTGCGTGAGGCCGAATGGCGCAGTGTGGCCCGGCAGTTGCTGGCGCAGGGGCTGATCGCCGTCGAGGGCGA
GTACGGGACGCTGGTCCTCACGGACGACAGCGGCGAGGTGCTGGGCGGCCGCCGGCCCGTCGTGCTGCGGCGCGAGCCGG
AGAAGGCGGCGAAGGCGGCCAGGGCGGCGCGGGAGAAGACCCCGAAGCAGCGGGCGGCGCCCGTCGATCTGCCGGCCGAG
GCGGTGCCGGTGTTCGAGTCGCTGCGCGCCTGGCGCGGCGCGACGGCCAAGGAGCAGGGCGTACCGGCGTACGTGATCTT
CCACGACGCCACGCTGCGCGAGATCGCGGTGCTGTCGCCCTCGACGCTGGACGAGCTGGGCACGGTGAACGGGGTCGGGG
AGAACAAGCTGGCCAAGTACGGTCAGCAGCTCCTCGACACGCTGGGCGCGCCGGGCGGCGAGCCCGACGGCCCCGATCCC
GAGGCCGGCTGA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(422-536)

HRDC domain (HRDC)

(564-627)

Helicase conserved C-terminal domain (Helicase_C)

(238-344)

DEAD/DEAH box helicase (DEAD)

(43-199)

RecQ zinc-binding (RecQ_Zn_bind)

(357-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

38.98

94.557

0.369