Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT17_RS47185 Genome accession   NZ_CP107967
Coordinates   10283950..10284594 (+) Length   214 a.a.
NCBI ID   WP_326715178.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00371     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 10278950..10289594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT17_RS47170 (OHT17_47210) - 10280621..10281072 (-) 452 Protein_9339 hypothetical protein -
  OHT17_RS47175 (OHT17_47215) - 10281061..10281573 (+) 513 WP_328543278.1 hypothetical protein -
  OHT17_RS47180 (OHT17_47220) - 10282581..10283504 (+) 924 WP_328543279.1 class I SAM-dependent methyltransferase -
  OHT17_RS47185 (OHT17_47225) vraR 10283950..10284594 (+) 645 WP_326715178.1 response regulator transcription factor Regulator
  OHT17_RS47190 (OHT17_47230) - 10284856..10285581 (-) 726 WP_328543280.1 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein -
  OHT17_RS47195 (OHT17_47235) - 10285547..10286737 (+) 1191 WP_328543281.1 NAD(P)/FAD-dependent oxidoreductase -
  OHT17_RS47200 (OHT17_47240) - 10287134..10288255 (+) 1122 WP_326715181.1 peptidoglycan bridge formation glycyltransferase FemA/FemB family protein -
  OHT17_RS47205 (OHT17_47245) - 10288651..10289442 (-) 792 WP_328543282.1 ABC transporter permease -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 22602.99 Da        Isoelectric Point: 5.6005

>NTDB_id=650377 OHT17_RS47185 WP_326715178.1 10283950..10284594(+) (vraR) [Streptomyces sp. NBC_00371]
MIRVLIVDDQSLIRSGLRSALEAADGIEVVGEAADGFQAVSATREYRPDVVIMDLYLPHGGGVEATVQLVRMEESPRVLA
LTRFSIDDIVLQALNAGAGGFLEKDHIAGELAAAVRTLAAGGLVLSPEIMKKLVSQAPTRGSGFLGEKIRTLTDSERNVL
ALIGAGHPNQSIAETLHLSLASVKTHVSRMLARLGLENRTQAAILAHEADLVGA

Nucleotide


Download         Length: 645 bp        

>NTDB_id=650377 OHT17_RS47185 WP_326715178.1 10283950..10284594(+) (vraR) [Streptomyces sp. NBC_00371]
GTGATCCGCGTTCTGATCGTTGATGACCAGAGCCTCATCCGTTCCGGCCTGCGCTCGGCGCTGGAGGCTGCGGACGGAAT
CGAGGTCGTTGGTGAAGCCGCTGACGGTTTTCAGGCCGTCAGTGCCACCAGGGAGTACCGTCCCGATGTCGTCATCATGG
ACCTGTACTTGCCCCACGGCGGAGGGGTGGAAGCCACGGTCCAGCTGGTGCGGATGGAGGAGTCTCCTCGGGTACTGGCA
CTGACCCGCTTCAGCATCGACGACATCGTCCTCCAGGCGCTCAACGCCGGAGCTGGGGGCTTCCTTGAGAAGGACCACAT
TGCCGGGGAGCTGGCTGCCGCGGTGCGGACCTTGGCGGCCGGCGGACTCGTTCTCTCGCCCGAGATCATGAAGAAGTTGG
TCAGTCAGGCGCCGACGCGTGGTTCCGGCTTCCTGGGGGAGAAGATCCGCACCCTCACCGACTCCGAGCGCAATGTCCTG
GCCCTCATCGGTGCAGGGCACCCCAACCAGAGCATCGCTGAGACTCTTCACCTGTCCCTGGCCAGCGTGAAGACGCATGT
CTCCCGGATGCTCGCCCGGCTCGGCCTCGAAAACCGGACCCAGGCCGCAATCCTCGCCCATGAGGCCGATCTGGTCGGTG
CCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.389

98.598

0.379