Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   L2Z13_RS12400 Genome accession   NZ_CP091361
Coordinates   2569179..2569505 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain AB177-VUB     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2564179..2574505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z13_RS12375 (L2Z13_12375) hemC 2564796..2565713 (+) 918 WP_002159654.1 hydroxymethylbilane synthase -
  L2Z13_RS12380 (L2Z13_12380) - 2565718..2566485 (+) 768 WP_000897410.1 uroporphyrinogen-III synthase -
  L2Z13_RS12385 (L2Z13_12385) - 2566494..2567333 (+) 840 WP_029424458.1 hypothetical protein -
  L2Z13_RS12390 (L2Z13_12390) - 2567343..2568536 (+) 1194 WP_029424457.1 membrane protein -
  L2Z13_RS12395 (L2Z13_12395) - 2568544..2568984 (+) 441 WP_057078042.1 thioesterase family protein -
  L2Z13_RS12400 (L2Z13_12400) hns 2569179..2569505 (+) 327 WP_000801427.1 H-NS histone family protein Regulator
  L2Z13_RS12405 (L2Z13_12405) gspN 2569836..2570579 (+) 744 WP_000730343.1 type II secretion system protein N -
  L2Z13_RS12410 (L2Z13_12410) - 2570579..2571415 (+) 837 WP_000870031.1 type II secretion system protein N -
  L2Z13_RS12415 (L2Z13_12415) gspD 2571457..2573727 (+) 2271 WP_001196431.1 type II secretion system secretin GspD -
  L2Z13_RS12420 (L2Z13_12420) - 2573768..2574397 (+) 630 WP_000219964.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=650369 L2Z13_RS12400 WP_000801427.1 2569179..2569505(+) (hns) [Acinetobacter baumannii strain AB177-VUB]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=650369 L2Z13_RS12400 WP_000801427.1 2569179..2569505(+) (hns) [Acinetobacter baumannii strain AB177-VUB]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1