Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   OHT17_RS36170 Genome accession   NZ_CP107967
Coordinates   7892397..7895462 (+) Length   1021 a.a.
NCBI ID   WP_326713568.1    Uniprot ID   A0ABV4SRB9
Organism   Streptomyces sp. NBC_00371     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7887397..7900462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT17_RS36145 (OHT17_36165) - 7887891..7888907 (+) 1017 WP_326713563.1 TerC family protein -
  OHT17_RS36150 (OHT17_36170) - 7889103..7890203 (+) 1101 WP_327577296.1 ionic transporter y4hA -
  OHT17_RS36155 (OHT17_36175) aroQ 7890289..7890762 (+) 474 WP_326713565.1 type II 3-dehydroquinate dehydratase -
  OHT17_RS36160 (OHT17_36180) - 7890820..7891476 (-) 657 WP_327577295.1 MBL fold metallo-hydrolase -
  OHT17_RS36165 (OHT17_36185) - 7891486..7892175 (-) 690 WP_327577294.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  OHT17_RS36170 (OHT17_36190) uvrA 7892397..7895462 (+) 3066 WP_326713568.1 excinuclease ABC subunit UvrA Machinery gene
  OHT17_RS36175 (OHT17_36195) - 7895518..7895916 (+) 399 WP_327577293.1 hypothetical protein -
  OHT17_RS36180 (OHT17_36200) - 7895959..7896885 (-) 927 WP_328542762.1 carbohydrate kinase -
  OHT17_RS36185 (OHT17_36205) - 7896970..7897251 (-) 282 WP_326713570.1 hypothetical protein -
  OHT17_RS36190 (OHT17_36210) - 7897561..7897986 (+) 426 WP_327577291.1 Rieske 2Fe-2S domain-containing protein -
  OHT17_RS36195 (OHT17_36215) - 7898022..7898972 (-) 951 WP_326713572.1 hypothetical protein -

Sequence

Protein


Download         Length: 1021 a.a.        Molecular weight: 111851.07 Da        Isoelectric Point: 7.5919

>NTDB_id=650357 OHT17_RS36170 WP_326713568.1 7892397..7895462(+) (uvrA) [Streptomyces sp. NBC_00371]
MADRLIVRGAREHNLRNVSLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARQFLGQMDKPDVDFIEGL
SPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLFARIGKPHCPECGRPISRQSPQAIVDKVLDLPEGSRFQVLSPLVRERK
GEFVDLFADLQTKGYSRARVDGQTIQLSEPPTLKKQEKHTIEVVVDRLTVKESAKRRLTDSVETALGLSGGMVVLDFVDL
PEDDPERERMYSEHLYCPYDDLSFEELEPRSFSFNSPFGACPDCTGIGTRMEVDPELIIPDEDKSLDEGAIHPWSHGHTK
DYFGRLIGALADALGFRTDIPFAGLPQRAKKALLHGHKTQIEVRYRNRYGRERVYTTPFEGAVPFVKRRHSEAESDSSRE
RFEGYMREVPCPTCEGTRLKPIVLAVTVMEKSIAEVSAMSISDCADFLGELKLNARDKKIAERVLKEVNERLRFLVDVGL
DYLSLNRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLVRLRDMGNTLIVVEHDEDTIKVAD
WVVDIGPGAGEHGGKVVHSGPLKELLANAESMTGQYLSGKRSIPLPDIRRPVDPTRRLTVHGARENNLRDIDVSFPLGVL
TAVTGVSGSGKSTLVNDILYTHLARELNGARNVPGRHTRVEGDDLVDKVVHVDQSPIGRTPRSNPATYTGVFDHVRKLFA
ETTEAKVRGYLPGRFSFNVKGGRCENCSGDGTIKIEMNFLPDVYVPCEVCHGARYNRETLDVHYKGKSIAEVLDMPIEEA
LGFFEAVPGIARHLRTLNDVGLGYVRLGQSAPTLSGGEAQRVKLASELQKRSTGRTVYVLDEPTTGLHFEDISKLITVLS
GLVDKGNSVIVIEHNLDVIKTADWVVDMGPEGGNGGGLVVAEGTPEEVAGEPSSHTGKFLRDILGADRFSDATVPAARTK
KTVAVKKATAAKKTVSATAKAPAKKVATASTTAAGRSATKAAAKKPAAKKTATKSTRARQD

Nucleotide


Download         Length: 3066 bp        

>NTDB_id=650357 OHT17_RS36170 WP_326713568.1 7892397..7895462(+) (uvrA) [Streptomyces sp. NBC_00371]
GTGGCCGACCGTCTCATCGTCCGTGGCGCGCGCGAGCACAATCTCCGTAACGTCTCGCTCGACCTTCCGCGCGACTCGCT
CATCGTCTTCACGGGTCTGTCGGGGTCCGGCAAGTCGTCGCTCGCCTTCGACACGATCTTCGCCGAGGGGCAGCGGCGGT
ACGTCGAGTCGCTCTCCTCGTACGCACGTCAGTTCCTCGGCCAGATGGACAAGCCGGACGTCGACTTCATCGAGGGCCTC
TCCCCGGCCGTCTCGATCGACCAGAAGTCGACCTCGCGCAACCCGCGCTCCACGGTCGGCACCATCACCGAGGTCTACGA
CTACCTGCGCCTGCTCTTCGCGCGCATCGGCAAGCCGCACTGTCCCGAGTGCGGCCGTCCCATCTCGCGCCAGTCGCCGC
AGGCCATCGTCGACAAGGTCCTCGACCTGCCCGAGGGCAGCCGCTTCCAGGTGCTCTCGCCGCTCGTGCGCGAGCGCAAG
GGCGAGTTCGTCGACCTCTTCGCCGACCTTCAGACCAAGGGGTACAGCCGCGCCCGGGTCGACGGGCAGACGATCCAGCT
GTCGGAACCACCCACCCTGAAGAAGCAGGAGAAGCACACCATCGAGGTGGTCGTCGACCGCCTCACGGTGAAGGAATCCG
CCAAGCGCCGCCTGACCGACTCCGTGGAGACCGCGCTCGGCCTCTCCGGCGGCATGGTCGTGCTCGACTTCGTCGACCTC
CCCGAGGACGACCCCGAGCGCGAGCGCATGTACTCGGAGCACCTGTACTGCCCGTACGACGACCTGTCCTTCGAAGAGCT
GGAGCCCCGCTCCTTCTCCTTCAACTCGCCCTTCGGCGCCTGCCCGGACTGCACCGGCATCGGCACACGCATGGAGGTCG
ACCCCGAGCTGATCATCCCGGACGAGGACAAGTCCCTCGACGAGGGCGCCATCCACCCCTGGTCGCACGGGCACACCAAG
GACTACTTCGGACGCCTCATCGGCGCCCTCGCGGACGCGTTGGGATTCCGGACCGACATCCCCTTCGCGGGCCTGCCGCA
GCGCGCCAAGAAGGCCCTCCTGCACGGCCACAAGACGCAGATCGAGGTCCGCTACCGCAACCGGTACGGCCGCGAGCGGG
TCTACACGACCCCCTTCGAAGGCGCCGTCCCGTTCGTCAAGCGGCGCCACAGCGAGGCCGAGAGCGACTCCAGCCGCGAG
CGCTTCGAGGGCTACATGCGCGAGGTGCCCTGCCCCACCTGTGAGGGCACGCGCCTCAAGCCGATCGTCCTCGCCGTCAC
GGTGATGGAGAAGTCGATCGCCGAGGTCTCCGCGATGTCCATCAGTGACTGCGCGGACTTCCTGGGCGAGCTGAAGCTCA
ACGCGCGCGACAAGAAGATCGCCGAGCGAGTCCTCAAGGAGGTCAACGAGCGGCTGCGGTTCCTCGTCGACGTCGGCCTC
GACTACCTCTCGCTCAACCGCGCGGCCGGCACCCTCTCCGGTGGCGAGGCCCAGCGCATCCGCCTCGCCACGCAGATCGG
CTCCGGCCTCGTCGGCGTGCTCTACGTCCTGGACGAGCCCTCGATCGGCCTGCACCAGCGCGACAACCACCGCCTGATCG
AGACCCTCGTACGGCTGCGCGACATGGGCAACACGCTCATCGTCGTCGAGCACGACGAGGACACCATCAAGGTCGCCGAC
TGGGTCGTCGACATCGGCCCCGGCGCGGGTGAGCACGGCGGCAAGGTCGTCCACAGCGGCCCCTTGAAGGAACTGCTCGC
CAACGCCGAGTCGATGACCGGCCAGTACCTGTCGGGCAAGAGGTCCATCCCGCTGCCGGACATCCGGCGCCCCGTGGACC
CGACGCGCAGGCTGACCGTGCACGGCGCCCGTGAGAACAACCTGCGCGACATCGACGTGTCGTTCCCCCTCGGCGTCCTG
ACCGCCGTCACCGGTGTCTCCGGTTCCGGCAAGTCGACCCTGGTCAACGACATCCTGTACACGCACCTCGCCCGCGAGCT
GAACGGGGCGCGGAACGTTCCCGGTCGGCACACGCGCGTGGAGGGCGACGACCTCGTCGACAAGGTCGTGCACGTCGACC
AGTCGCCGATCGGCCGCACGCCGCGCTCGAACCCGGCGACGTACACCGGAGTCTTCGACCACGTCCGCAAGCTGTTCGCC
GAGACCACCGAGGCGAAGGTCCGGGGCTACCTGCCGGGACGTTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGAACTG
CTCCGGCGACGGCACGATCAAGATCGAGATGAACTTCCTGCCGGACGTCTACGTCCCGTGCGAGGTCTGCCACGGAGCGC
GCTACAACCGCGAGACGCTGGACGTCCACTACAAGGGCAAGTCCATCGCCGAGGTCCTGGACATGCCCATCGAGGAGGCA
CTCGGCTTCTTCGAGGCGGTCCCGGGCATCGCCCGCCACCTGCGCACGCTGAACGACGTCGGTCTCGGTTACGTCCGGCT
CGGCCAGTCCGCGCCGACCCTCTCCGGAGGCGAGGCCCAGCGCGTGAAGCTGGCGAGCGAGCTGCAGAAGCGGTCCACGG
GACGCACCGTCTACGTCCTCGACGAGCCGACCACCGGTTTGCACTTCGAGGACATCAGCAAGCTCATCACCGTCCTGTCG
GGCCTTGTCGACAAGGGGAACTCGGTGATCGTCATCGAGCACAACCTCGACGTCATCAAGACCGCCGACTGGGTCGTCGA
CATGGGCCCCGAGGGCGGTAACGGCGGTGGCCTCGTCGTCGCCGAGGGCACCCCCGAAGAGGTCGCGGGCGAACCGTCCA
GCCACACCGGCAAGTTCCTGCGCGACATCCTCGGCGCCGACCGGTTCAGCGACGCGACGGTGCCCGCGGCGCGTACGAAG
AAGACGGTGGCGGTGAAGAAGGCCACAGCCGCGAAGAAGACCGTCTCGGCGACGGCTAAGGCCCCGGCGAAGAAGGTTGC
CACGGCCAGCACCACGGCGGCCGGGAGGTCGGCCACGAAGGCCGCGGCGAAGAAGCCGGCCGCGAAGAAGACCGCGACCA
AGTCCACGCGGGCCCGCCAGGACTGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(131-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-403)

ABC transporter (ABC_tran)

(628-864)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.508

92.556

0.523
  uvrA Streptococcus pneumoniae TIGR4

56.508

92.556

0.523
  uvrA Streptococcus pneumoniae D39

56.508

92.556

0.523