Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   L2Z13_RS03125 Genome accession   NZ_CP091361
Coordinates   634860..635240 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB177-VUB     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 629860..640240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z13_RS03095 (L2Z13_03095) tadA 629981..630481 (-) 501 WP_031949736.1 tRNA adenosine(34) deaminase TadA -
  L2Z13_RS03100 (L2Z13_03100) - 630488..631612 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  L2Z13_RS03105 (L2Z13_03105) ung 631609..632322 (-) 714 WP_029424376.1 uracil-DNA glycosylase -
  L2Z13_RS03110 (L2Z13_03110) - 632373..632969 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  L2Z13_RS03115 (L2Z13_03115) gspK 633200..634159 (-) 960 WP_029424377.1 type II secretion system minor pseudopilin GspK -
  L2Z13_RS03120 (L2Z13_03120) xcpW 634159..634860 (-) 702 WP_000594589.1 type II secretion system minor pseudopilin GspJ Machinery gene
  L2Z13_RS03125 (L2Z13_03125) xcpV 634860..635240 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  L2Z13_RS03130 (L2Z13_03130) - 635230..635784 (-) 555 WP_005128793.1 type II secretion system protein -
  L2Z13_RS03135 (L2Z13_03135) - 635794..636402 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  L2Z13_RS03140 (L2Z13_03140) - 636440..637213 (-) 774 WP_000497295.1 TatD family hydrolase -
  L2Z13_RS03145 (L2Z13_03145) - 637231..637572 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  L2Z13_RS03150 (L2Z13_03150) - 637584..638564 (-) 981 WP_001075409.1 DNA polymerase III subunit delta' -
  L2Z13_RS03155 (L2Z13_03155) kdsB 638576..639337 (-) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=650339 L2Z13_RS03125 WP_000836911.1 634860..635240(-) (xcpV) [Acinetobacter baumannii strain AB177-VUB]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=650339 L2Z13_RS03125 WP_000836911.1 634860..635240(-) (xcpV) [Acinetobacter baumannii strain AB177-VUB]
ATGAAATCTAAAGGCTTTACCCTTTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1