NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	L2Z13_RS03120	Genome accession	NZ_CP091361
Coordinates	634159..634860 (-)	Length	233 a.a.
NCBI ID	WP_000594589.1	Uniprot ID	A0A9P3CZ31
Organism	Acinetobacter baumannii strain AB177-VUB
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 629159..639860

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L2Z13_RS03090 (L2Z13_03090)	-	629464..629907 (-)	444	WP_001246675.1	SRPBCC family protein	-
L2Z13_RS03095 (L2Z13_03095)	tadA	629981..630481 (-)	501	WP_031949736.1	tRNA adenosine(34) deaminase TadA	-
L2Z13_RS03100 (L2Z13_03100)	-	630488..631612 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
L2Z13_RS03105 (L2Z13_03105)	ung	631609..632322 (-)	714	WP_029424376.1	uracil-DNA glycosylase	-
L2Z13_RS03110 (L2Z13_03110)	-	632373..632969 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
L2Z13_RS03115 (L2Z13_03115)	gspK	633200..634159 (-)	960	WP_029424377.1	type II secretion system minor pseudopilin GspK	-
L2Z13_RS03120 (L2Z13_03120)	xcpW	634159..634860 (-)	702	WP_000594589.1	type II secretion system minor pseudopilin GspJ	Machinery gene
L2Z13_RS03125 (L2Z13_03125)	xcpV	634860..635240 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
L2Z13_RS03130 (L2Z13_03130)	-	635230..635784 (-)	555	WP_005128793.1	type II secretion system protein	-
L2Z13_RS03135 (L2Z13_03135)	-	635794..636402 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
L2Z13_RS03140 (L2Z13_03140)	-	636440..637213 (-)	774	WP_000497295.1	TatD family hydrolase	-
L2Z13_RS03145 (L2Z13_03145)	-	637231..637572 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
L2Z13_RS03150 (L2Z13_03150)	-	637584..638564 (-)	981	WP_001075409.1	DNA polymerase III subunit delta'	-
L2Z13_RS03155 (L2Z13_03155)	kdsB	638576..639337 (-)	762	WP_000680696.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26639.58 Da Isoelectric Point: 9.3468

                                >NTDB_id=650338 L2Z13_RS03120 WP_000594589.1 634159..634860(-) (xcpW) [Acinetobacter baumannii strain AB177-VUB]

MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ

ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS

STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

Download Length: 702 bp

                                >NTDB_id=650338 L2Z13_RS03120 WP_000594589.1 634159..634860(-) (xcpW) [Acinetobacter baumannii strain AB177-VUB]

ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG

CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT

TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA

ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA

TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC

GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG

AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA

TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT

ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996

Detailed information NTG0650338