Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   OG842_RS29770 Genome accession   NZ_CP107960
Coordinates   6599845..6602865 (+) Length   1006 a.a.
NCBI ID   WP_266736513.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00376     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6594845..6607865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG842_RS29750 (OG842_29745) - 6594937..6596880 (+) 1944 WP_266736520.1 TerD family protein -
  OG842_RS29755 (OG842_29750) - 6597175..6598185 (+) 1011 WP_266736518.1 TerC family protein -
  OG842_RS29760 (OG842_29755) - 6598313..6598969 (-) 657 WP_266736516.1 MBL fold metallo-hydrolase -
  OG842_RS29765 (OG842_29760) - 6598980..6599669 (-) 690 WP_266736514.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  OG842_RS29770 (OG842_29765) uvrA 6599845..6602865 (+) 3021 WP_266736513.1 excinuclease ABC subunit UvrA Machinery gene
  OG842_RS29775 (OG842_29770) - 6603159..6603587 (+) 429 WP_266736511.1 Rieske (2Fe-2S) protein -
  OG842_RS29780 (OG842_29775) - 6603636..6604562 (-) 927 WP_266737353.1 hypothetical protein -
  OG842_RS29785 (OG842_29780) - 6604793..6605434 (+) 642 WP_266736510.1 papain-like cysteine protease family protein -
  OG842_RS29790 (OG842_29785) - 6605439..6606308 (+) 870 WP_266736508.1 hypothetical protein -

Sequence

Protein


Download         Length: 1006 a.a.        Molecular weight: 110669.99 Da        Isoelectric Point: 7.5919

>NTDB_id=650271 OG842_RS29770 WP_266736513.1 6599845..6602865(+) (uvrA) [Streptomyces sp. NBC_00376]
MADRLIVRGAREHNLKNVSLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARQFLGQMDKPDVDFIEGL
SPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLFARIGKPHCPECRRPISRQSPQAIVDKVLGLPEGSRFQVLSPLVRERK
GEFVDLFADLQTKGYSRARVDGETIQLSEPPKLKKQEKHTIEVVIDRLTVKDSAKRRLTDSVETALGLSGGMVVLDFVDL
PEDDPERERMYSEHLYCPYDDLSFEELEPRSFSFNSPFGACPDCTGIGTRMEVDPELIVPDEEKSLDEGAIHPWSHGHTK
EYFGRQINALADALGFRTDIPWAGLPQRAKKALLHGHKIQTEVRYRNRYGRERAYTTPAFEGAVQFVKRRHSDAESDSSR
ERFEGYMREVPCPTCEGTRLKPIVLAVTVMERSIAEVAAMSISECAEFLGRMKLNARDKKIAERVLKEVNERLKFLVDVG
LDYLSLNRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLVRLRDMGNTLIVVEHDEDTIKVA
DWVVDIGPGAGEHGGKVVHSGSLKELLANGESITGQYLTGKKQIPMPDVRRPVDPQRRLTVHGARENNLQDIDVSFPLGL
LTAVTGVSGSGKSTLVNDILYTHLARELNGAKSVPGRHTRVDGDDLVDKVVHVDQSPIGRTPRSNPATYTGVFDHVRKLF
AETMEAKVRGYLPGRFSFNVKGGRCENCSGDGTIKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKSIAEVLDMPIEE
GLEFFEAVPTIARHLRTLNEVGLGYVRLGQSAPTLSGGEAQRVKLASELQKRSTGRTVYVLDEPTTGLHFEDISKLIKVL
SGLVDKGNSVIVIEHNLDVIKTADWVIDMGPEGGSGGGLVIAEGTPEEVAGVPASHTGKFLQGILDPERVSEAAVPAARK
PMRKAAVKKAVAAKSAPARKTATARTSTDGTAKTAAAKKATRARKA

Nucleotide


Download         Length: 3021 bp        

>NTDB_id=650271 OG842_RS29770 WP_266736513.1 6599845..6602865(+) (uvrA) [Streptomyces sp. NBC_00376]
GTGGCCGACCGTCTCATCGTCCGTGGCGCTCGCGAGCACAACCTCAAGAACGTCTCGCTCGACCTCCCGCGCGACTCCCT
CATCGTCTTCACCGGGCTCTCCGGGTCGGGCAAGTCGTCCCTTGCGTTCGACACGATCTTCGCCGAGGGCCAGCGGCGCT
ACGTGGAGTCCCTCTCCTCGTACGCCCGCCAGTTCCTCGGTCAGATGGACAAGCCGGACGTCGACTTCATCGAGGGCCTC
TCGCCCGCCGTCTCCATCGACCAGAAGTCGACCTCGCGCAACCCGCGCTCGACGGTCGGCACCATCACCGAGGTCTACGA
CTACCTCCGGCTGCTCTTCGCCCGGATCGGCAAGCCGCACTGCCCGGAGTGCCGCCGGCCCATCTCCCGCCAGTCGCCGC
AGGCGATCGTCGACAAGGTGCTCGGCCTGCCCGAGGGCAGCCGTTTCCAGGTGCTCTCGCCGCTGGTGCGCGAGCGCAAG
GGCGAGTTCGTCGACCTCTTCGCCGATCTGCAGACAAAGGGCTACAGCAGGGCCCGGGTCGACGGCGAGACCATCCAGCT
CTCCGAGCCGCCCAAGCTGAAGAAGCAGGAGAAGCACACCATCGAGGTGGTCATCGACCGCCTCACGGTGAAGGACAGCG
CCAAGCGTCGGCTGACCGACTCGGTCGAGACCGCGCTCGGGCTCTCCGGCGGCATGGTCGTGCTCGACTTCGTCGACCTC
CCCGAGGACGACCCCGAGCGCGAGCGGATGTACTCCGAGCACCTCTACTGCCCGTACGACGACCTCTCCTTCGAGGAGCT
CGAACCGCGCTCCTTCTCCTTCAACTCGCCCTTCGGCGCCTGCCCGGACTGCACGGGTATCGGTACGCGGATGGAGGTCG
ACCCGGAGCTGATCGTCCCGGACGAGGAGAAGTCGCTCGACGAGGGGGCGATCCACCCCTGGTCGCACGGCCACACCAAG
GAGTACTTCGGCCGGCAGATCAACGCCCTCGCCGACGCTCTCGGATTCCGTACGGACATCCCCTGGGCAGGGCTGCCGCA
GCGCGCCAAGAAGGCCCTGCTCCACGGCCACAAGATCCAGACCGAGGTCCGCTACCGCAACCGCTACGGGCGGGAGCGCG
CGTACACCACCCCCGCCTTCGAGGGCGCGGTGCAGTTCGTCAAGCGCCGGCACTCCGACGCCGAGAGCGACTCCAGCCGG
GAGCGCTTCGAGGGCTACATGCGCGAGGTGCCCTGTCCGACCTGTGAGGGCACCAGGCTCAAGCCGATCGTCCTCGCGGT
GACGGTGATGGAGAGGTCCATCGCCGAGGTCGCCGCCATGTCGATCAGCGAATGCGCCGAGTTCCTCGGCCGGATGAAGC
TCAACGCCCGCGACAAGAAGATCGCCGAGCGGGTGCTGAAGGAGGTCAACGAGCGGCTGAAGTTCCTCGTCGACGTCGGC
CTCGACTACCTCTCGCTCAACCGTGCGGCAGGCACCCTGTCCGGCGGCGAGGCCCAGCGCATCCGCCTCGCCACCCAGAT
CGGCTCCGGCCTGGTCGGCGTGCTGTACGTGCTGGACGAACCGTCCATCGGCCTGCACCAGCGGGACAACCACCGGCTGA
TCGAGACCCTGGTCCGGCTCCGCGACATGGGCAACACGCTCATCGTCGTCGAGCACGACGAGGACACCATCAAGGTCGCC
GACTGGGTCGTCGACATCGGCCCCGGCGCCGGTGAGCACGGCGGCAAGGTGGTCCACTCCGGATCGCTCAAGGAACTGCT
GGCCAACGGCGAGTCGATCACCGGTCAGTATCTGACCGGCAAGAAGCAGATCCCGATGCCCGACGTCCGGCGCCCCGTCG
ACCCGCAGCGCAGGCTCACGGTGCACGGAGCCCGGGAGAACAACCTCCAGGACATCGACGTCTCCTTCCCGCTCGGCCTG
CTCACGGCCGTCACGGGCGTCTCGGGTTCGGGGAAGTCGACGCTGGTCAACGACATCCTCTACACCCACCTGGCGCGCGA
GCTGAACGGCGCCAAGTCGGTCCCCGGCCGGCACACCCGGGTCGACGGCGACGACCTGGTCGACAAGGTGGTGCACGTCG
ACCAGTCGCCCATCGGCCGCACGCCCCGGTCCAACCCGGCCACGTACACCGGCGTCTTCGACCATGTCCGCAAGCTGTTC
GCGGAGACAATGGAGGCGAAGGTGCGCGGCTATCTGCCGGGCCGCTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGAA
CTGCTCCGGCGACGGCACCATCAAGATCGAGATGAACTTCCTGCCGGACGTGTACGTCCCGTGCGAGGTCTGCCACGGAG
CGCGCTACAACCGGGAGACCCTGGAGGTCCACTACAAGGGCAAGTCCATCGCCGAGGTACTGGACATGCCGATCGAGGAG
GGCCTGGAGTTCTTCGAGGCCGTCCCGACGATCGCCCGCCACCTGCGCACGCTCAACGAGGTGGGCCTCGGATACGTGCG
GCTCGGCCAGTCCGCGCCGACGCTCTCCGGCGGTGAGGCGCAGCGCGTGAAGCTCGCCAGCGAGCTGCAGAAGCGCTCCA
CCGGCCGTACGGTCTATGTCCTGGACGAGCCGACCACGGGTCTGCACTTCGAGGACATCAGCAAGCTCATCAAGGTGCTC
TCCGGGCTGGTCGACAAGGGCAACTCGGTGATCGTCATCGAGCACAACCTCGATGTGATCAAGACCGCGGACTGGGTCAT
CGACATGGGTCCCGAAGGGGGCAGCGGCGGCGGTCTGGTCATCGCCGAGGGCACTCCGGAGGAGGTCGCCGGGGTTCCGG
CCAGCCACACCGGCAAGTTCCTCCAGGGCATCCTGGACCCGGAGCGGGTGAGCGAGGCCGCGGTGCCCGCGGCCCGCAAG
CCGATGCGGAAGGCGGCCGTGAAGAAGGCGGTCGCCGCGAAGTCGGCCCCGGCCAGGAAGACGGCCACGGCCCGGACGAG
CACGGACGGGACCGCGAAGACGGCTGCGGCGAAGAAGGCGACCCGCGCGCGCAAGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(629-865)

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-404)

UvrA interaction domain (UvrA_inter)

(131-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.303

94.632

0.533
  uvrA Streptococcus pneumoniae TIGR4

56.303

94.632

0.533
  uvrA Streptococcus pneumoniae D39

56.303

94.632

0.533