Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   OG842_RS28575 Genome accession   NZ_CP107960
Coordinates   6334380..6335456 (-) Length   358 a.a.
NCBI ID   WP_266736834.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00376     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 6329380..6340456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG842_RS28555 (OG842_28550) - 6329625..6331427 (-) 1803 WP_266736839.1 phosphatidylglycerol lysyltransferase domain-containing protein -
  OG842_RS28560 (OG842_28555) cobT 6331531..6332643 (-) 1113 WP_266736837.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  OG842_RS28565 (OG842_28560) - 6332784..6333986 (-) 1203 WP_266736835.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  OG842_RS28570 (OG842_28565) - 6334115..6334324 (+) 210 WP_072483289.1 hypothetical protein -
  OG842_RS28575 (OG842_28570) htrA 6334380..6335456 (-) 1077 WP_266736834.1 trypsin-like peptidase domain-containing protein Regulator
  OG842_RS28580 (OG842_28575) - 6335554..6336288 (-) 735 WP_266737372.1 methyltransferase domain-containing protein -
  OG842_RS28585 (OG842_28580) - 6336402..6337001 (-) 600 WP_266737371.1 DUF3043 domain-containing protein -
  OG842_RS28590 (OG842_28585) - 6337299..6338081 (+) 783 WP_266736832.1 PspA/IM30 family protein -
  OG842_RS28595 (OG842_28590) - 6338091..6338369 (+) 279 WP_266736830.1 hypothetical protein -
  OG842_RS28600 (OG842_28595) - 6338564..6339805 (+) 1242 WP_266736828.1 histidine kinase -

Sequence


Protein


Download         Length: 358 a.a.        Molecular weight: 36508.37 Da        Isoelectric Point: 5.4201

>NTDB_id=650268 OG842_RS28575 WP_266736834.1 6334380..6335456(-) (htrA) [Streptomyces sp. NBC_00376]
MDIFHSRARVRRLLLPLAAGVCAIALVSGCSDAASESPRTEPSNPASATQTASDLQSDYQAVIKNVLPSVVQIQAAESLG
SGIVYDTKGHIVTNAHVVGNDKTFKVTVATGEKEQKAMLVASYPEQDLAVIKLDSVPNGLKPAKFGNSEKVEVGQIVLAM
GSPLGLSSSVTQGIVSALGRTVSESRTGGGTGATIANMVQTSAAINPGNSGGALVNLNSEVIGIPTLAATDPELGGSAAP
GIGFAIPVSMVKTVADQIIKNGKVTDSGRAALNITGRTVVDDNYNPAGVALVSVTKDGAADKAGLRPGDIITRIDDQPVT
TITTLSEALASDKPGQKVTVTYLRDGAEKTAQVTLGEI

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=650268 OG842_RS28575 WP_266736834.1 6334380..6335456(-) (htrA) [Streptomyces sp. NBC_00376]
ATGGATATATTCCACTCCCGCGCCCGCGTTCGCCGGCTGCTGCTGCCCCTGGCCGCCGGGGTCTGTGCGATCGCCCTGGT
GAGCGGCTGCTCGGACGCCGCCTCCGAGTCACCAAGGACCGAACCGAGCAATCCGGCCTCCGCCACCCAGACCGCAAGCG
ATCTACAGAGCGACTACCAGGCCGTGATCAAGAACGTGCTGCCGTCGGTGGTGCAGATCCAGGCCGCCGAGAGCCTGGGC
TCCGGCATCGTCTACGACACCAAGGGCCATATCGTCACCAATGCCCATGTGGTCGGCAACGACAAGACGTTCAAGGTCAC
CGTCGCGACCGGCGAGAAGGAGCAGAAGGCCATGCTGGTGGCCTCCTACCCGGAGCAGGATCTGGCCGTCATCAAGCTCG
ACAGCGTGCCGAACGGGCTGAAGCCCGCGAAGTTCGGCAACTCGGAGAAGGTCGAGGTGGGGCAGATCGTACTGGCGATG
GGCTCGCCGCTCGGTCTGTCCTCCAGCGTCACCCAGGGCATCGTCTCGGCGCTCGGCCGGACCGTCAGCGAGAGCCGCAC
GGGCGGCGGCACCGGTGCGACGATCGCGAACATGGTGCAGACCTCGGCCGCGATCAACCCGGGCAACAGCGGGGGTGCGC
TGGTCAACCTGAACAGCGAGGTGATCGGCATCCCGACCCTGGCGGCGACCGACCCGGAGCTGGGCGGCAGCGCGGCGCCG
GGGATCGGGTTCGCGATCCCGGTGTCGATGGTGAAGACGGTCGCCGATCAGATCATCAAGAACGGCAAGGTCACCGACTC
GGGCCGGGCGGCCCTGAACATCACCGGCCGTACGGTCGTCGACGACAACTACAACCCGGCCGGTGTGGCGCTGGTGAGCG
TGACGAAGGACGGCGCCGCGGACAAGGCCGGGCTGCGGCCCGGCGACATCATCACCAGGATCGACGACCAGCCGGTCACG
ACGATCACCACCTTGTCGGAGGCGCTGGCCTCGGACAAGCCGGGCCAGAAGGTCACGGTGACCTATCTGCGCGACGGGGC
GGAGAAGACGGCGCAGGTCACCCTGGGCGAGATCTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mitis NCTC 12261

34.037

100

0.36