Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG842_RS11010 Genome accession   NZ_CP107960
Coordinates   2504961..2506172 (-) Length   403 a.a.
NCBI ID   WP_266729440.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00376     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2499961..2511172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG842_RS10990 (OG842_10970) - 2500175..2500513 (-) 339 WP_266729436.1 P-II family nitrogen regulator -
  OG842_RS10995 (OG842_10975) - 2500510..2501862 (-) 1353 WP_266729437.1 ammonium transporter -
  OG842_RS11000 (OG842_10980) - 2502232..2503704 (-) 1473 WP_266729438.1 hypothetical protein -
  OG842_RS11005 (OG842_10985) - 2504126..2504785 (+) 660 WP_266729439.1 bifunctional DNA primase/polymerase -
  OG842_RS11010 (OG842_10990) pilA 2504961..2506172 (-) 1212 WP_266729440.1 signal recognition particle-docking protein FtsY Machinery gene
  OG842_RS11015 (OG842_10995) - 2506282..2507697 (+) 1416 WP_328512193.1 cytosine permease -
  OG842_RS11020 (OG842_11000) - 2507756..2508730 (+) 975 WP_266729442.1 LLM class flavin-dependent oxidoreductase -
  OG842_RS11025 (OG842_11005) - 2508752..2510170 (-) 1419 WP_266729443.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 42397.38 Da        Isoelectric Point: 4.4181

>NTDB_id=650227 OG842_RS11010 WP_266729440.1 2504961..2506172(-) (pilA) [Streptomyces sp. NBC_00376]
MEFVILAVVIALVAVGVISGLVVSSRKKKQLPPAPSSTPTITPPAEPHVGEEAETPREEPRRTIEEVGPPEAEAPAEEAP
EAVEPEAPAAPAIEVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQELVERLR
ERVRVLGTRTPEGLRALLREELLNLLGTDFDRAVKTESGLDTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAAD
TFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGPL
DEILLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGPDDLAPFEPEAFVDAL
IGD

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=650227 OG842_RS11010 WP_266729440.1 2504961..2506172(-) (pilA) [Streptomyces sp. NBC_00376]
ATGGAATTCGTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGTGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCCCCGGCACCGTCGAGCACGCCGACCATCACTCCTCCCGCCGAGCCCCATGTCGGCGAGGAAGCCG
AGACGCCGCGCGAGGAACCGCGCCGCACCATCGAGGAGGTCGGCCCGCCCGAGGCCGAGGCTCCCGCCGAGGAGGCCCCC
GAGGCCGTCGAGCCGGAGGCGCCCGCCGCCCCCGCCATCGAGGTGCCCGAGCCCACCGCCGGCCGTCTGGTACGGCTGCG
CGCCCGGCTCGCCCGCTCGCAGAACTCCCTCGGCAAGGGGCTGCTCACGCTCCTGTCCCGGGACAACCTCGACGAGGACA
CCTGGGAGGAGATCGAGGACACCCTCCTCACCGCCGACGTCGGCGTCGCGCCCACCCAGGAACTGGTGGAGCGCCTCCGC
GAGCGCGTCCGCGTGCTCGGCACCCGTACCCCCGAGGGGCTGCGCGCGCTGCTGCGCGAAGAGCTCCTCAACCTGCTCGG
CACCGACTTCGACCGCGCGGTCAAGACGGAGAGCGGCCTCGACACCCCCGGCGTCGTGATGGTCGTCGGCGTCAACGGAA
CCGGCAAGACCACCACCACCGGCAAGCTGGCCCGGGTGCTCGTCGCCGACGGCCGCAGCGTCGTGCTCGGCGCGGCCGAC
ACCTTCCGGGCGGCCGCCGCCGACCAGCTCCAGACCTGGGGCGAGCGCGTCGGCGCCCGCACCGTGCGCGGCCCCGAGGG
CGGCGACCCCGCGTCGATCGCCTTCGACGCGGTGAAGGAAGGTATCGCCGAGGGCGCCGATGTGGTCCTCATCGACACCG
CCGGACGGCTGCACACGAAGACCGGGCTGATGGACGAGCTCGGCAAGGTCAAGCGGGTCGTCGAGAAGCACGGACCGCTC
GACGAGATCCTGCTCGTCCTCGACGCCACGACCGGGCAGAACGGCCTGGTGCAGGCCCGGGTGTTCGCCGAGGTCGTGGA
CATCACCGGCATCGTGCTCACCAAGCTGGACGGCACCGCCAAGGGCGGCATCGTCATCGCCGTCCAGCGCGAACTGGGCG
TACCGGTGAAGCTCGTCGGTCTCGGCGAGGGACCGGACGATCTGGCCCCGTTCGAACCGGAGGCGTTCGTGGACGCCCTG
ATCGGCGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(117-182)

SRP54-type protein, GTPase domain (SRP54)

(204-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.623

90.819

0.387