Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG842_RS10135 Genome accession   NZ_CP107960
Coordinates   2294767..2295558 (+) Length   263 a.a.
NCBI ID   WP_266729304.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00376     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2289767..2300558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG842_RS10120 (OG842_10110) - 2290068..2290511 (-) 444 WP_266729301.1 helix-turn-helix transcriptional regulator -
  OG842_RS10125 (OG842_10115) - 2290690..2293584 (-) 2895 WP_266729302.1 vitamin B12-dependent ribonucleotide reductase -
  OG842_RS10130 (OG842_10120) nrdR 2293745..2294257 (-) 513 WP_266729303.1 transcriptional regulator NrdR -
  OG842_RS10135 (OG842_10125) dinR/lexA 2294767..2295558 (+) 792 WP_266729304.1 transcriptional repressor LexA Regulator
  OG842_RS10140 (OG842_10130) - 2295660..2297630 (-) 1971 WP_266729305.1 ATP-dependent DNA helicase -
  OG842_RS10145 (OG842_10135) - 2297668..2299566 (-) 1899 WP_266729306.1 IucA/IucC family siderophore biosynthesis protein -
  OG842_RS10150 (OG842_10140) - 2299627..2300442 (-) 816 WP_266729307.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28589.33 Da        Isoelectric Point: 6.9854

>NTDB_id=650221 OG842_RS10135 WP_266729304.1 2294767..2295558(+) (dinR/lexA) [Streptomyces sp. NBC_00376]
MTTTADSATITAQDRSQSRFEPVHAMNDSVTNMEGPEPRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNS
AYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=650221 OG842_RS10135 WP_266729304.1 2294767..2295558(+) (dinR/lexA) [Streptomyces sp. NBC_00376]
GTGACCACCACCGCTGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGATTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCACGAACATGGAGGGGCCAGAGCCGCGCCCAGCGCGCTCATTGCCCGGCCGACCTCCTGGAATCCGGGCGG
ACAGCTCGGGGCTCACGGACCGGCAGCGGCGGGTGATCGAGGTGATCCGGGATTCCGTGCAGCGGCGTGGCTATCCGCCC
TCGATGCGGGAGATCGGTCAGGCGGTGGGCCTGTCCAGCACGTCCTCCGTCGCCCATCAGCTGATGGCCCTGGAGCGGAA
GGGCTTCCTGCGCCGCGACCCGCACCGCCCGCGGGCGTACGAGGTCCGGGGTTCGGACCAGCCCAGTTCGCAGCCCACCG
ACACCACCGGCAAGCCCGCGGCGTCGTACGTGCCGCTGGTCGGCCGGATCGCCGCCGGCGGCCCGATCCTCGCCGAGGAG
TCGGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTCGTCGGTGACGGCGAGCTGTTCGTGCTCAAGGTCGTCGGTGACTC
GATGATCGAGGCGGCGATCTGCGACGGCGACTGGGTCACCGTGCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCGTGG
CGGCCATGCTGGACGGCGAGGCCACGGTCAAGCGCTTCAAGCGGGAGGACGGCCATGTCTGGCTGCTCCCGCACAACTCC
GCGTACCAGCCGATCCCGGGCGACGAGGCGACCATCCTCGGCAAGGTGGTGGCCGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(145-257)

LexA DNA binding domain (LexA_DNA_bind)

(56-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.608

0.376