Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   L2Z17_RS02065 Genome accession   NZ_CP091358
Coordinates   421683..422501 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain AB181-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 416683..427501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z17_RS02030 (L2Z17_02030) - 417266..417395 (-) 130 Protein_381 hypothetical protein -
  L2Z17_RS02035 (L2Z17_02035) rpoZ 417434..417712 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L2Z17_RS02040 (L2Z17_02040) gmk 417785..418414 (-) 630 WP_000015937.1 guanylate kinase -
  L2Z17_RS02045 (L2Z17_02045) ispH 418537..419487 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L2Z17_RS02050 (L2Z17_02050) fimU 419657..420130 (+) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  L2Z17_RS02055 (L2Z17_02055) pilV 420124..420684 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  L2Z17_RS02060 (L2Z17_02060) pilW 420685..421686 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  L2Z17_RS02065 (L2Z17_02065) pilX 421683..422501 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  L2Z17_RS02070 (L2Z17_02070) pilY1 422513..426367 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  L2Z17_RS02075 (L2Z17_02075) pilY2 426380..426862 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  L2Z17_RS02080 (L2Z17_02080) pilE 426859..427284 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=650209 L2Z17_RS02065 WP_000149374.1 421683..422501(+) (pilX) [Acinetobacter baumannii strain AB181-VUB]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=650209 L2Z17_RS02065 WP_000149374.1 421683..422501(+) (pilX) [Acinetobacter baumannii strain AB181-VUB]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993