Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   OHS71_RS30940 Genome accession   NZ_CP107958
Coordinates   6977768..6979855 (-) Length   695 a.a.
NCBI ID   WP_328482613.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00377     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6972768..6984855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS71_RS30920 (OHS71_30920) pgl 6973180..6973962 (-) 783 WP_328482610.1 6-phosphogluconolactonase -
  OHS71_RS30925 (OHS71_30925) opcA 6973959..6975092 (-) 1134 WP_328482611.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  OHS71_RS30930 (OHS71_30930) zwf 6975089..6976612 (-) 1524 WP_328484698.1 glucose-6-phosphate dehydrogenase -
  OHS71_RS30935 (OHS71_30935) tal 6976616..6977734 (-) 1119 WP_328482612.1 transaldolase -
  OHS71_RS30940 (OHS71_30940) recP/tkt 6977768..6979855 (-) 2088 WP_328482613.1 transketolase Machinery gene
  OHS71_RS30945 (OHS71_30945) - 6980211..6981164 (+) 954 WP_328482614.1 heme o synthase -
  OHS71_RS30950 (OHS71_30950) - 6981313..6981669 (+) 357 WP_328482615.1 hypothetical protein -
  OHS71_RS30955 (OHS71_30955) - 6981744..6982850 (+) 1107 WP_328482616.1 amidohydrolase family protein -
  OHS71_RS30960 (OHS71_30960) - 6982912..6983670 (+) 759 WP_328482617.1 aminoglycoside adenylyltransferase domain-containing protein -
  OHS71_RS30965 (OHS71_30965) - 6983719..6984729 (-) 1011 WP_328482618.1 COX15/CtaA family protein -

Sequence

Protein


Download         Length: 695 a.a.        Molecular weight: 74880.71 Da        Isoelectric Point: 4.9593

>NTDB_id=650195 OHS71_RS30940 WP_328482613.1 6977768..6979855(-) (recP/tkt) [Streptomyces sp. NBC_00377]
MSTKPTTTDLEWTELDQRAVDTARVLAADAVQKVGNGHPGTAMSLAPAAYTLFQKVMRHDPADADWVGRDRFVLSAGHSS
LTLYTQLYLAGFGLELDDLKSFRTFGSKTPGHPEYGHTTGVETTTGPLGQGVANAVGMAMAARYERGLFDPEAPVGESPF
DHFVYAIAGDGCLQEGISAEASSLAGHQKLGNLILLWDDNHISIEGDTETAVSEDTVLRYEAYGWHVQRVTPKPDGDLDP
HALYDAIEAAKLVTDKPSFIAMRSIIAWPAPNAQNTEAAHGSALGDDEVAATKRVLGFDPEKSFEVADEVIAHTRGALER
GQAARAVWEKSFQQWRDNNTDRAAEYDRVAAGELPTGWEEKLPVFEPGKGVATRAASGKVLQALGAVIPELWGGSADLAG
SNNTTIDKTSSFLPEGNPLPEASPYGRTVHFGIREHSMAAEMNGIALHGNTRVYGGTFLVFSDYMRNAVRLSALMHVPVT
YVWTHDSIGLGEDGPTHQPVEHLASLRAIPGLNIVRPADANETAIAWREILKRWTKVFGKGAPHGLVLTRQGVPTYEPDE
NAAKGGYVLFEASTGTPEVILLATGSEVHVAVEARERLEADGVPTRVVSMPSVEWFEEQDQGYRDSVLPPSVKARVSVEA
GIGLTWHKYVGDAGRIVSLEHFGASADGKVLFQEYGFTAENVAAKARESIAAAQR

Nucleotide


Download         Length: 2088 bp        

>NTDB_id=650195 OHS71_RS30940 WP_328482613.1 6977768..6979855(-) (recP/tkt) [Streptomyces sp. NBC_00377]
GTGAGCACCAAGCCGACCACCACAGACCTCGAGTGGACCGAGCTGGACCAGCGGGCGGTGGACACCGCCCGCGTCCTGGC
CGCCGACGCCGTACAGAAGGTCGGCAACGGCCATCCCGGTACGGCGATGAGCCTGGCGCCTGCCGCCTACACCCTCTTCC
AGAAGGTGATGCGGCACGACCCGGCGGACGCCGACTGGGTGGGCCGCGACCGCTTCGTGCTGTCCGCGGGCCACTCGTCC
CTGACCCTCTACACCCAGCTGTACCTGGCCGGCTTCGGCCTGGAGCTGGACGACCTGAAGTCGTTCCGCACCTTCGGCTC
GAAGACGCCGGGTCACCCGGAGTACGGCCACACCACGGGCGTCGAGACGACGACCGGCCCGCTGGGCCAGGGTGTCGCGA
ACGCCGTCGGCATGGCGATGGCCGCCCGCTACGAGCGCGGCCTGTTCGACCCCGAGGCCCCGGTCGGCGAGTCGCCGTTC
GACCACTTCGTCTACGCGATCGCCGGTGACGGCTGCCTCCAGGAGGGCATCTCCGCGGAGGCGTCCTCGCTGGCCGGCCA
CCAGAAGCTCGGCAACCTGATCCTGCTGTGGGACGACAACCACATCTCGATCGAGGGCGACACCGAGACGGCCGTCTCCG
AGGACACCGTTCTGCGCTACGAGGCGTACGGCTGGCACGTCCAGCGCGTCACCCCCAAGCCGGACGGCGACCTGGACCCG
CACGCCCTGTACGACGCGATCGAGGCCGCGAAGCTGGTGACGGACAAGCCGTCCTTCATCGCGATGCGTTCGATCATCGC
CTGGCCCGCCCCGAACGCGCAGAACACCGAGGCCGCGCACGGCTCGGCGCTCGGCGACGACGAGGTCGCGGCCACCAAGC
GGGTCCTCGGCTTCGACCCGGAGAAGTCCTTCGAGGTCGCGGACGAGGTCATCGCCCACACCCGCGGGGCCCTGGAGCGC
GGCCAGGCCGCCCGCGCCGTGTGGGAGAAGTCCTTCCAGCAGTGGCGGGACAACAACACCGACCGCGCCGCCGAGTACGA
CCGCGTCGCCGCGGGCGAGCTGCCCACCGGCTGGGAGGAGAAGCTCCCGGTCTTCGAGCCCGGCAAGGGCGTCGCCACCC
GCGCCGCGTCCGGCAAGGTGCTCCAGGCGCTCGGCGCCGTCATCCCCGAGCTGTGGGGCGGCTCCGCCGACCTCGCCGGC
TCGAACAACACGACGATCGACAAGACGTCGTCGTTCCTCCCCGAGGGCAACCCGCTGCCCGAGGCGAGCCCTTACGGCCG
CACCGTGCACTTCGGCATCCGCGAGCACTCCATGGCCGCGGAGATGAACGGCATCGCCCTGCACGGCAACACGCGCGTCT
ACGGCGGCACGTTCCTCGTGTTCTCCGACTACATGCGCAACGCCGTCCGTCTGTCCGCCCTGATGCACGTGCCGGTGACG
TACGTCTGGACGCACGACTCGATCGGCCTCGGCGAGGACGGACCGACGCACCAGCCGGTCGAGCACCTCGCGTCGCTGCG
CGCGATCCCGGGTCTGAACATCGTCCGCCCGGCCGACGCCAACGAGACGGCGATCGCCTGGCGCGAGATCCTCAAGCGCT
GGACGAAGGTCTTCGGCAAGGGCGCCCCGCACGGACTGGTCCTCACCCGACAGGGCGTGCCGACCTACGAGCCGGACGAG
AACGCGGCCAAGGGCGGCTACGTCCTGTTCGAGGCCTCCACGGGGACGCCCGAGGTGATCCTCCTCGCGACCGGCTCCGA
GGTGCACGTCGCCGTCGAGGCGCGCGAGCGGCTCGAAGCCGACGGTGTGCCCACGCGTGTGGTGTCCATGCCCTCCGTGG
AGTGGTTCGAGGAGCAGGACCAGGGGTACCGGGACAGCGTCCTGCCCCCGTCCGTGAAGGCCCGGGTCTCGGTCGAGGCG
GGTATCGGTCTCACCTGGCACAAGTACGTCGGGGACGCCGGCCGCATCGTTTCCCTGGAGCACTTCGGTGCTTCCGCCGA
CGGCAAGGTCCTCTTCCAGGAGTACGGCTTCACTGCCGAGAACGTGGCCGCGAAGGCCCGGGAATCCATCGCCGCCGCCC
AGCGCTGA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(576-682)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(16-355)

Transketolase, pyrimidine binding domain (Transket_pyr)

(370-533)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

44.853

97.842

0.439