Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHS71_RS27595 Genome accession   NZ_CP107958
Coordinates   6208251..6209984 (-) Length   577 a.a.
NCBI ID   WP_328482016.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00377     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6203251..6214984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS71_RS27585 (OHS71_27580) - 6204934..6206238 (+) 1305 WP_328484664.1 sigma-70 family RNA polymerase sigma factor -
  OHS71_RS27590 (OHS71_27585) rcrQ 6206323..6208251 (-) 1929 WP_328482015.1 ABC transporter ATP-binding protein Regulator
  OHS71_RS27595 (OHS71_27590) rcrP 6208251..6209984 (-) 1734 WP_328482016.1 ABC transporter ATP-binding protein Regulator
  OHS71_RS27600 (OHS71_27595) - 6210214..6211671 (-) 1458 WP_328482017.1 FGGY family carbohydrate kinase -
  OHS71_RS27605 (OHS71_27600) - 6211853..6212158 (-) 306 WP_328482018.1 YtxH domain-containing protein -
  OHS71_RS27625 (OHS71_27620) - 6213274..6213408 (-) 135 WP_328482019.1 hypothetical protein -
  OHS71_RS27630 (OHS71_27625) - 6213725..6213856 (+) 132 Protein_5450 IS630 family transposase -
  OHS71_RS27635 (OHS71_27630) - 6213928..6214971 (-) 1044 WP_328482020.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62472.65 Da        Isoelectric Point: 5.5388

>NTDB_id=650189 OHS71_RS27595 WP_328482016.1 6208251..6209984(-) (rcrP) [Streptomyces sp. NBC_00377]
MLIRLLRTYLRPYKKPIALLVALQFLQTCATLYLPTLNAHIIDNGVVEGDTGYILSYGAVMIGISLAQVVCNIGAVYYGA
RTASAIGRDVRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQIQMLALMTFTLMVSAPIMCVGGVVLALGLDVPLSAV
LIAVVPTLGVCVTLIVRRLRPLFRSMQVKLDTVNRVLREQITGNRVIRAFVRDEFEQQRFREANADLTGISLKTGNLLAL
MFPVVMTTVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PVAPITELRRHGHLEIRQAGFRYPGAEEPVLKSIDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDVTEGEVLVDGVAVA
EVDPVLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKDFVSKLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAEATVVIVAQRVATIRDADRIIVLDEGLIVGTGTHGELMAEN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=650189 OHS71_RS27595 WP_328482016.1 6208251..6209984(-) (rcrP) [Streptomyces sp. NBC_00377]
GTGCTCATACGACTACTACGGACCTATCTCAGGCCCTACAAGAAACCCATCGCCCTGCTGGTGGCGCTCCAGTTCCTCCA
GACGTGCGCCACCCTCTACCTGCCCACGCTGAACGCGCACATCATCGACAACGGCGTCGTCGAGGGGGACACCGGCTACA
TCCTGTCCTACGGCGCCGTGATGATCGGCATCTCGCTGGCGCAGGTCGTGTGCAACATCGGCGCCGTGTACTACGGGGCC
AGAACCGCCTCGGCGATCGGCCGGGACGTACGGGCGGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGCGAGGTCGG
TCACTTCGGCGCGCCCTCGCTGATCACCCGGACCACCAACGACGTCCAGCAGATCCAGATGCTGGCCCTGATGACCTTCA
CGCTCATGGTGTCGGCGCCCATCATGTGCGTGGGCGGGGTCGTGCTGGCGCTCGGCCTGGACGTGCCGCTGTCCGCCGTG
CTCATCGCCGTGGTGCCGACCCTGGGCGTCTGCGTGACGCTCATCGTGCGCCGGCTGCGGCCGCTGTTCCGGTCGATGCA
GGTGAAGCTGGACACCGTGAACCGGGTGCTGCGGGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGGGACG
AGTTCGAGCAGCAGCGGTTCCGCGAGGCCAACGCCGATCTGACCGGCATCTCGCTGAAGACCGGCAACCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACCACGGTGAACCTGTCGTCGATCGCCGTGGTGTGGTTCGGCGCCCACCGGATCGACAGCGG
TGGGATGCAGATCGGTGATCTGACCGCGTTCCTCGCCTATCTCATGCAGATCGTCATGTCCGTGATGATGGCCACGTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTGCTGGACACCTCGTCGTCCGTGGTCCCG
CCGGTGGCTCCAATCACCGAACTGCGGCGGCACGGGCATCTGGAGATCCGGCAGGCCGGATTCCGTTATCCCGGTGCCGA
GGAGCCCGTCCTCAAGTCCATCGACCTCGTGGCGCGGCCGGGCGAGACGACGGCCGTGATCGGCTCGACCGGCAGTGGCA
AGTCCACGCTGCTGGGGCTGGTTCCCCGGCTGTTCGACGTCACCGAGGGCGAGGTGCTCGTCGACGGGGTGGCCGTCGCC
GAGGTCGACCCGGTGCTGCTGGCGAAGACCGTCGGTCTCGTGCCGCAGAAGCCGTACCTGTTCGCGGGCACGGTCGCCAC
CAACCTGCGCTACGGCAATCCGGACGCCACGGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCACAGGCCAAGGACTTCG
TGAGCAAGCTGGAGAACGGGCTCGACTCCCCCATCGCGCAGGGCGGGACGAACGTCTCCGGTGGTCAGCGGCAGCGGCTG
GCGATCGCGCGCACGCTCGTGCAGCGGCCGGAGATCTATCTCTTCGACGACTCCTTCTCGGCCCTCGACTACGCCACCGA
CGCGGCGCTGCGGGCGGCGCTCGGGCGGGAGACCGCCGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGGCCACCATCC
GCGACGCCGACCGGATCATCGTCCTCGACGAGGGTCTGATCGTCGGTACGGGTACCCATGGCGAGTTGATGGCGGAGAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.188

97.574

0.373