Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHS71_RS27590 Genome accession   NZ_CP107958
Coordinates   6206323..6208251 (-) Length   642 a.a.
NCBI ID   WP_328482015.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00377     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6201323..6213251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS71_RS27575 (OHS71_27570) - 6201553..6202818 (+) 1266 WP_328482013.1 FAD-dependent oxidoreductase -
  OHS71_RS27580 (OHS71_27575) dnaG 6202860..6204755 (+) 1896 WP_328482014.1 DNA primase -
  OHS71_RS27585 (OHS71_27580) - 6204934..6206238 (+) 1305 WP_328484664.1 sigma-70 family RNA polymerase sigma factor -
  OHS71_RS27590 (OHS71_27585) rcrQ 6206323..6208251 (-) 1929 WP_328482015.1 ABC transporter ATP-binding protein Regulator
  OHS71_RS27595 (OHS71_27590) rcrP 6208251..6209984 (-) 1734 WP_328482016.1 ABC transporter ATP-binding protein Regulator
  OHS71_RS27600 (OHS71_27595) - 6210214..6211671 (-) 1458 WP_328482017.1 FGGY family carbohydrate kinase -
  OHS71_RS27605 (OHS71_27600) - 6211853..6212158 (-) 306 WP_328482018.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69615.96 Da        Isoelectric Point: 5.3105

>NTDB_id=650188 OHS71_RS27590 WP_328482015.1 6206323..6208251(-) (rcrQ) [Streptomyces sp. NBC_00377]
MAGPMGRMMAGTGPENRSLDFKVSGRRLLAQFKPERFTLYAMLVCVTLSVGLSVVGPKILGQATDLVFAGIVGREMPAGA
SKEQVLDSMRERGDGSVADMLRSTDFTPGKGIDFGAVGNVLLFALGVFLIAGLLMAVATRLVNKTVNRTMFRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLVMMFWVSWILALVALVTVPLSAVVATRVGK
RSQPHFVQQWRSTGKLNAHIEEMYTGHTLVKVFGRQEESAQQFAEQNDALYEAGFKAQFNSGVMQPLMMFVSNINYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDAEEQEADPVAAERPAELHGRVALE
GVSFRYDPERPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSAGRITLDGVDIARMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFVRTLPEGYDTVIDDEGSGVSAGEKQLITIARAFLSDPTILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHADLLAADGAYARLYKAQFAEALAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=650188 OHS71_RS27590 WP_328482015.1 6206323..6208251(-) (rcrQ) [Streptomyces sp. NBC_00377]
ATGGCCGGGCCCATGGGGCGCATGATGGCCGGCACCGGTCCCGAGAACCGTTCGCTGGACTTCAAGGTGTCCGGCAGGCG
GCTGCTCGCCCAGTTCAAGCCGGAGCGGTTCACCCTGTACGCGATGCTGGTCTGCGTGACGCTGAGCGTCGGCCTCAGCG
TGGTCGGGCCGAAGATCCTCGGCCAGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGACGCGAGATGCCGGCCGGGGCG
AGCAAGGAGCAGGTTCTCGACTCGATGCGGGAACGCGGTGACGGCAGCGTCGCCGACATGCTCAGGAGCACCGACTTCAC
GCCCGGCAAGGGCATCGACTTCGGTGCGGTGGGGAACGTCCTGCTGTTCGCGCTGGGAGTGTTCCTGATCGCCGGTCTGC
TGATGGCCGTGGCGACGCGCCTGGTCAACAAGACCGTCAACCGCACGATGTTCCGGATGCGCGAGGACGTGCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGTCAGCGCGGCGAGGTGCTGTCCCGCGCGACGAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGGCAGCTCATCAACTCGCTGCTGACCATCATCGGTGTGCTGGTGATGATGT
TCTGGGTGTCGTGGATCCTGGCCCTGGTCGCGCTCGTCACCGTGCCGCTGTCGGCGGTCGTCGCCACGCGCGTGGGCAAG
CGGTCGCAGCCGCATTTCGTGCAGCAGTGGCGCTCCACCGGCAAGCTCAACGCCCATATCGAGGAGATGTACACCGGCCA
CACGCTGGTGAAGGTGTTCGGGCGCCAGGAGGAGTCGGCGCAGCAGTTCGCCGAGCAGAACGACGCGTTGTACGAGGCCG
GGTTCAAGGCCCAGTTCAACAGCGGGGTGATGCAGCCGCTGATGATGTTCGTGTCGAACATCAACTACGTGCTGGTCGCG
GTGGTCGGCGGACTGCGGGTCGCCTCGGGTTCTCTGTCCATCGGTGACGTGCAGGCGTTCATCCAGTACTCGCGCCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCCTCGGCCGAGCGGGTCTTCGAAC
TCCTGGACGCGGAGGAGCAGGAGGCGGACCCGGTCGCGGCCGAGCGGCCCGCGGAGCTGCACGGGCGGGTGGCGCTGGAG
GGCGTGTCCTTCCGGTACGACCCGGAGAGGCCGCTCATCGAGGACCTGTCCCTGACGGTGGAGCCCGGGCACACGGTCGC
CATCGTCGGTCCGACGGGCGCCGGCAAGACGACGCTGGTGAACCTGCTCATGCGGTTCTACGACGTCTCCGCCGGGCGCA
TCACCCTCGACGGAGTCGACATAGCGCGGATGTCCCGCGACGAACTGCGTGCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCCGAGAACATCGCGTACGGGGCGTCGCGGGAGGTCACCCGGGGCGAGATCGAGGAGGC
GGCGCGGGCCGCGCACGCGGACCGGTTCGTCCGTACCCTGCCCGAGGGCTACGACACGGTGATCGACGACGAGGGCAGCG
GGGTGAGCGCCGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGACGATCCTGGTGCTGGACGAG
GCGACCAGTTCCGTCGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGAAACTGGCGCACGGGCGTACGTCGTT
CGTCATCGCGCACCGGCTGTCGACCATCCGGGACGCCGACACGATCCTGGTGATGGAGAACGGCTCGATCGTGGAGCAGG
GGGCGCACGCCGACCTGCTCGCGGCCGACGGGGCCTACGCGCGCCTGTACAAGGCGCAGTTCGCGGAGGCACTGGCCGAG
GTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(41-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.226

96.417

0.388