Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS71_RS06975 Genome accession   NZ_CP107958
Coordinates   1584211..1584546 (+) Length   111 a.a.
NCBI ID   WP_328477886.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00377     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1579211..1589546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS71_RS06965 (OHS71_06950) - 1579992..1581455 (-) 1464 WP_328477882.1 aldehyde dehydrogenase family protein -
  OHS71_RS06970 (OHS71_06955) - 1581592..1584045 (+) 2454 WP_328477884.1 SpoIIE family protein phosphatase -
  OHS71_RS06975 (OHS71_06960) vraR 1584211..1584546 (+) 336 WP_328477886.1 response regulator transcription factor Regulator
  OHS71_RS06980 (OHS71_06965) - 1584900..1585967 (+) 1068 WP_328477888.1 aromatic ring-hydroxylating dioxygenase subunit alpha -
  OHS71_RS06985 (OHS71_06970) - 1585964..1586137 (+) 174 WP_328477890.1 hypothetical protein -
  OHS71_RS06990 (OHS71_06975) - 1586134..1587069 (+) 936 WP_328477892.1 PDR/VanB family oxidoreductase -
  OHS71_RS06995 (OHS71_06980) - 1587455..1588123 (-) 669 WP_328477894.1 hypothetical protein -
  OHS71_RS07000 (OHS71_06985) - 1588367..1589020 (+) 654 WP_328477896.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 11427.20 Da        Isoelectric Point: 4.9609

>NTDB_id=650134 OHS71_RS06975 WP_328477886.1 1584211..1584546(+) (vraR) [Streptomyces sp. NBC_00377]
MAIRVTVADDQAVVRAGIAAILDAEPDLCVVGQAADGDTAIYLALSARPDVALMDVRMPGIGGLAATAAITQRSPATRVL
VLTTFGLDEYLFAALRAGPRISCSRTPSRSG

Nucleotide


Download         Length: 336 bp        

>NTDB_id=650134 OHS71_RS06975 WP_328477886.1 1584211..1584546(+) (vraR) [Streptomyces sp. NBC_00377]
ATGGCGATCAGAGTGACCGTCGCGGACGACCAGGCCGTCGTACGGGCCGGGATCGCGGCGATCCTCGACGCGGAACCCGA
CCTGTGCGTCGTCGGGCAGGCGGCGGACGGCGACACGGCCATCTACCTCGCGCTGTCGGCGCGGCCGGACGTCGCGCTGA
TGGACGTCCGCATGCCGGGGATCGGCGGGCTCGCGGCGACAGCCGCGATCACCCAACGCAGCCCCGCGACCCGTGTCCTG
GTGCTCACCACCTTCGGTCTCGACGAGTACCTGTTCGCCGCGCTGCGCGCCGGGCCGCGGATTTCCTGCTCAAGGACGCC
GAGCCGGAGCGGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.816

88.288

0.36