Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS71_RS05980 Genome accession   NZ_CP107958
Coordinates   1350062..1350730 (+) Length   222 a.a.
NCBI ID   WP_328477539.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00377     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1345062..1355730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS71_RS05970 (OHS71_05960) - 1346593..1348665 (+) 2073 WP_328484406.1 MMPL family transporter -
  OHS71_RS05975 (OHS71_05965) - 1348779..1350065 (+) 1287 WP_328484407.1 histidine kinase -
  OHS71_RS05980 (OHS71_05970) vraR 1350062..1350730 (+) 669 WP_328477539.1 response regulator transcription factor Regulator
  OHS71_RS05985 (OHS71_05975) - 1350817..1351454 (-) 638 Protein_1196 FCD domain-containing protein -
  OHS71_RS05990 (OHS71_05980) - 1351341..1351793 (+) 453 WP_328484408.1 DUF5134 domain-containing protein -
  OHS71_RS05995 (OHS71_05985) - 1352397..1352837 (+) 441 WP_328477541.1 GntR family transcriptional regulator -
  OHS71_RS06000 (OHS71_05990) - 1352834..1353745 (+) 912 WP_328477543.1 ABC transporter ATP-binding protein -
  OHS71_RS06005 (OHS71_05995) - 1353742..1354698 (+) 957 WP_328477545.1 transporter -
  OHS71_RS06010 (OHS71_06000) - 1354957..1355194 (+) 238 Protein_1201 hypothetical protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23249.81 Da        Isoelectric Point: 4.9413

>NTDB_id=650133 OHS71_RS05980 WP_328477539.1 1350062..1350730(+) (vraR) [Streptomyces sp. NBC_00377]
MTAIRVLLADDQTLVRAAFAMLVESAPGMEVVGQAGTGRQAVELARSARADLVVMDLRMPDLDGIEATRLIAADEDLAGV
KVLVLTTYDTDDHVVEALRAGASGFLVKDTRPADLLDAIRTVAAGEALLSPGPTARLIARLLRNAEAPPPTGGPECLSER
ERGVLRLVARGLNNTEIAETLGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGVVTPGAG

Nucleotide


Download         Length: 669 bp        

>NTDB_id=650133 OHS71_RS05980 WP_328477539.1 1350062..1350730(+) (vraR) [Streptomyces sp. NBC_00377]
GTGACGGCCATTCGGGTACTGCTGGCCGATGACCAGACGCTCGTACGGGCGGCGTTCGCGATGCTCGTCGAGTCGGCGCC
GGGCATGGAGGTGGTGGGACAGGCGGGAACCGGCCGCCAGGCCGTCGAACTGGCCCGGAGTGCCCGCGCCGACCTGGTCG
TCATGGACCTCCGGATGCCCGACCTCGACGGTATCGAGGCGACCCGTCTGATCGCCGCCGACGAGGACCTGGCGGGCGTG
AAGGTGCTGGTCCTGACGACGTACGACACGGACGATCACGTGGTGGAGGCGCTGCGCGCGGGCGCGTCGGGCTTCCTGGT
CAAGGACACCAGGCCCGCGGACCTCCTGGACGCGATCCGCACGGTGGCGGCGGGCGAGGCCCTGCTCTCACCGGGTCCCA
CGGCCCGCCTGATCGCCCGCCTCCTGCGCAACGCCGAGGCACCGCCCCCGACGGGCGGCCCCGAATGCCTCTCGGAACGG
GAACGCGGGGTGCTGAGACTGGTCGCCCGGGGCCTCAACAACACGGAGATCGCGGAAACCCTGGGCCTGAGCCCCCTGAC
CGCGAAGACCCACGTCAGCCGGATCATGGGCAAGCTGGGCGCGCGGGACCGGGCCCAGCTGGTGATCGTGGCGTACGAGT
CGGGGGTGGTGACACCGGGGGCGGGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-120)

Bacterial regulatory proteins, luxR family (GerE)

(156-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.383

96.396

0.36