Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHS71_RS02960 Genome accession   NZ_CP107958
Coordinates   628400..629074 (-) Length   224 a.a.
NCBI ID   WP_328476459.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00377     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 623400..634074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS71_RS02945 (OHS71_02940) - 624696..624965 (-) 270 WP_328476453.1 phosphopantetheine-binding protein -
  OHS71_RS02950 (OHS71_02945) - 625183..626031 (-) 849 WP_328476455.1 hypothetical protein -
  OHS71_RS02955 (OHS71_02950) - 626075..627373 (-) 1299 WP_328476457.1 hypothetical protein -
  OHS71_RS02960 (OHS71_02955) dinR/lexA 628400..629074 (-) 675 WP_328476459.1 transcriptional repressor LexA Regulator
  OHS71_RS02965 (OHS71_02960) - 629319..629615 (-) 297 WP_328476461.1 hypothetical protein -
  OHS71_RS02970 (OHS71_02965) - 629876..629992 (+) 117 Protein_593 SigE family RNA polymerase sigma factor -
  OHS71_RS02975 (OHS71_02970) - 630219..630806 (+) 588 WP_328476463.1 GNAT family protein -
  OHS71_RS02980 (OHS71_02975) - 630810..631334 (+) 525 WP_328476465.1 hypothetical protein -
  OHS71_RS02985 (OHS71_02985) - 632144..632710 (+) 567 WP_328476467.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24274.65 Da        Isoelectric Point: 7.2457

>NTDB_id=650131 OHS71_RS02960 WP_328476459.1 628400..629074(-) (dinR/lexA) [Streptomyces sp. NBC_00377]
MESSATPRRGRPPGPRAAAGELTSRQSAIVRYISESVDRRGYPPSMREIGQAVELASTSSVAHQLMALERKGVLYRDPHR
PRAYRVRSPWAAPDQGARSQAQVDVPLIGRIAAGAPLLAEEMVEDVYCMPRQVVGDGDLFALTVSGDSMVDAAICDGDIV
TVRRQDSADHGDVVAALLGDEATVKVLRRQDGQVWLMPRNPAYEPIRGDQAQILGKVVGVLRLL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=650131 OHS71_RS02960 WP_328476459.1 628400..629074(-) (dinR/lexA) [Streptomyces sp. NBC_00377]
ATGGAAAGCAGCGCGACCCCACGCCGGGGCCGGCCCCCAGGTCCTCGGGCTGCGGCCGGCGAGCTGACGAGCCGTCAGTC
CGCCATCGTCCGCTACATCTCGGAGTCGGTCGACCGGCGCGGCTACCCGCCGTCGATGCGTGAGATCGGTCAGGCTGTCG
AGCTCGCCAGTACGTCCTCGGTCGCCCACCAGCTGATGGCGCTGGAGCGCAAAGGCGTTCTCTACCGCGACCCGCACCGT
CCGCGCGCCTACCGGGTCCGGTCCCCGTGGGCGGCGCCCGACCAGGGCGCCAGGAGCCAGGCACAGGTGGACGTGCCCCT
CATCGGACGGATCGCCGCAGGCGCCCCGCTGCTCGCCGAGGAGATGGTCGAGGACGTCTACTGCATGCCCCGGCAGGTCG
TGGGCGACGGCGATCTGTTCGCGCTGACGGTCTCCGGTGACTCCATGGTCGACGCGGCGATCTGTGACGGCGACATCGTG
ACCGTGCGGCGCCAGGACAGCGCGGATCACGGCGACGTCGTCGCCGCGCTCCTGGGCGACGAAGCCACCGTCAAGGTGCT
GCGCCGGCAGGACGGGCAGGTGTGGCTCATGCCCCGCAACCCGGCCTACGAGCCGATCCGGGGCGACCAGGCGCAGATCC
TCGGGAAGGTCGTAGGCGTCCTGCGCCTGCTCTAG

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(21-83)

Peptidase S24-like (Peptidase_S24)

(106-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.098

91.071

0.411