Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG959_RS26770 Genome accession   NZ_CP107951
Coordinates   5995779..5997512 (-) Length   577 a.a.
NCBI ID   WP_326662458.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00385     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5990779..6002512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG959_RS26760 (OG959_26770) - 5992676..5993800 (+) 1125 WP_326662454.1 RNA polymerase sigma factor -
  OG959_RS26765 (OG959_26775) rcrQ 5993848..5995779 (-) 1932 WP_326662456.1 ABC transporter ATP-binding protein Regulator
  OG959_RS26770 (OG959_26780) rcrP 5995779..5997512 (-) 1734 WP_326662458.1 ABC transporter ATP-binding protein Regulator
  OG959_RS26775 (OG959_26785) - 5997680..5999125 (-) 1446 WP_326662460.1 FGGY family carbohydrate kinase -
  OG959_RS26780 (OG959_26790) - 5999192..5999491 (-) 300 WP_219572595.1 YtxH domain-containing protein -
  OG959_RS26800 (OG959_26810) - 6000570..6002060 (+) 1491 WP_326662462.1 MFS transporter -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62668.72 Da        Isoelectric Point: 5.2467

>NTDB_id=650111 OG959_RS26770 WP_326662458.1 5995779..5997512(-) (rcrP) [Streptomyces sp. NBC_00385]
MLIKLLRAYLGPYKKPIALLVVFQLLQTCATLYLPTLNADIIDNGVVQGDTGYIVQYGGVMIVVSIAQVVCNIGAVYIGA
RTASALGRDVRASVFDRVQSFSARELGRFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGVAVSLIVRKMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEERFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PVNPVRELTVHGHLEVRGADFRYPGAEEPVLRAVDLVARAGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEIAQAKEFVEALEHGLDAPIAQGGTNVSGGQRQRL
SIARTLVQRPEIYLFDDSFSALDYATDAALRAALLRETRGATVVIVAQRVSTIRDADRILVLDEGRVVGSGSHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=650111 OG959_RS26770 WP_326662458.1 5995779..5997512(-) (rcrP) [Streptomyces sp. NBC_00385]
GTGCTCATAAAACTCCTGCGGGCCTATCTCGGCCCGTACAAGAAACCGATCGCACTGCTGGTCGTCTTCCAGCTGCTGCA
GACCTGCGCCACGCTCTATCTGCCCACCCTCAACGCGGACATCATTGACAACGGTGTCGTCCAGGGGGACACGGGCTACA
TCGTCCAGTACGGCGGCGTCATGATCGTCGTCAGCATCGCCCAGGTGGTCTGCAACATCGGGGCCGTCTACATCGGAGCC
CGTACCGCGTCCGCACTCGGCCGCGACGTACGGGCCTCGGTCTTCGACCGGGTGCAGTCGTTCTCCGCGCGCGAGCTCGG
CCGGTTCGGCGCGCCCTCGCTGATCACCCGTACGACCAATGACGTGCAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTCCCGCTGTCCGCGGTG
CTGCTCGCGGTGGTGCCGGTCCTCGGCGTCGCGGTGAGCCTGATCGTGCGGAAGATGCGTCCGCTGTTCCGGACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCGTTCGTGCGCGACG
GCTACGAGGAGGAGCGCTTCCGGGGCGCCAACACCGAGCTGACGGACGTGGCGCTGTCCACGGGCCGTCTGATGGCACTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTCGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGGAGATCGGCGCGCTGACCGCGTTCCTCTCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGTGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCGATTCCTCCGTGGTGCCG
CCGGTGAACCCGGTGCGGGAGCTCACGGTCCACGGGCATCTGGAGGTACGCGGTGCGGACTTCCGCTACCCCGGCGCCGA
GGAGCCGGTGCTGCGCGCGGTGGACCTGGTGGCGCGGGCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGACTCGTACCGCGGCTGTTCGACGTGACGGACGGCCAGGTGCTGGTCGACGGGACGGACGTGCGG
ACGCTGGACCCGGTCCTGCTGGCCAAGACCGTGAGCCTGGTCCCGCAGAAGCCTTACCTGTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGCAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGATCGCGCAGGCCAAGGAGTTCG
TCGAGGCACTGGAGCACGGCCTGGACGCACCGATCGCACAGGGCGGCACCAATGTCTCCGGGGGGCAGCGACAGCGGCTC
TCGATCGCCCGGACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTGGACTACGCCACGGA
CGCGGCACTGCGTGCGGCGCTGCTGCGGGAGACCCGGGGGGCGACGGTGGTGATCGTCGCGCAGCGGGTGTCGACCATCC
GTGACGCCGACCGGATCCTGGTGCTGGACGAGGGCCGCGTCGTCGGTTCCGGCAGCCACCACGAACTGATGGACGGCAAT
GAGACATACCGGGAGATCGTTCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.7

94.107

0.383