Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG959_RS26765 Genome accession   NZ_CP107951
Coordinates   5993848..5995779 (-) Length   643 a.a.
NCBI ID   WP_326662456.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00385     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5988848..6000779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG959_RS26755 (OG959_26765) dnaG 5990578..5992479 (+) 1902 WP_326662452.1 DNA primase -
  OG959_RS26760 (OG959_26770) - 5992676..5993800 (+) 1125 WP_326662454.1 RNA polymerase sigma factor -
  OG959_RS26765 (OG959_26775) rcrQ 5993848..5995779 (-) 1932 WP_326662456.1 ABC transporter ATP-binding protein Regulator
  OG959_RS26770 (OG959_26780) rcrP 5995779..5997512 (-) 1734 WP_326662458.1 ABC transporter ATP-binding protein Regulator
  OG959_RS26775 (OG959_26785) - 5997680..5999125 (-) 1446 WP_326662460.1 FGGY family carbohydrate kinase -
  OG959_RS26780 (OG959_26790) - 5999192..5999491 (-) 300 WP_219572595.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69143.50 Da        Isoelectric Point: 5.1129

>NTDB_id=650110 OG959_RS26765 WP_326662456.1 5993848..5995779(-) (rcrQ) [Streptomyces sp. NBC_00385]
MAGPGGRMMAGGAPTDRSMDFKGSSKRLLKRFAAEKATLYVMLVAVALSVALSVVGPKILGKATDLVFAGVVGRGMDAGT
TKEQAVEGLRRSNSGLADMLSKVDFTPGQGMDFDAIGRVLLVALAVYVGAGLLMLVSTRLSIRVINRVVFQLREDIQTKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIIGVLVMMFWISPLLALVALVTVPLSVVVAAKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHTLVKVFGRQDESARDFAEQNEALYEAGFKAQFNSGIMQPLMMFVSNLNYVLIAV
VGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGIASAERIFELLDAEEQDADPSKGEGEFPGELRGSVSL
ENVSFRYDPEKPLIEDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDIAKMSRDDLRSGIGMVLQD
TWLFGGTIAENIAYGASGDVTREQIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMAGLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDGLLEAHGAYARLYAAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=650110 OG959_RS26765 WP_326662456.1 5993848..5995779(-) (rcrQ) [Streptomyces sp. NBC_00385]
ATGGCCGGGCCTGGCGGACGCATGATGGCGGGCGGGGCTCCGACCGACCGGTCCATGGACTTCAAGGGCTCGTCGAAGCG
GCTGCTGAAGCGCTTCGCGGCGGAGAAGGCCACCCTGTACGTGATGCTGGTGGCCGTCGCGCTGAGCGTGGCGCTGTCGG
TGGTCGGCCCGAAGATCCTCGGCAAGGCCACCGACCTGGTGTTCGCCGGTGTCGTCGGCCGGGGAATGGACGCGGGGACG
ACGAAGGAACAGGCCGTCGAGGGCCTGCGCAGGAGCAACAGCGGTCTGGCCGACATGCTCTCCAAGGTGGACTTCACCCC
GGGGCAGGGCATGGACTTCGACGCGATCGGCCGGGTGCTGCTCGTGGCGCTGGCCGTGTACGTCGGTGCGGGGCTGCTGA
TGCTGGTGTCGACGCGGCTGTCGATCCGGGTGATCAACCGGGTCGTGTTCCAGCTGCGTGAGGACATCCAGACGAAGCTG
TCGCGGCTGCCGCTGTCGTACTTCGACCGGGCCAAGCGCGGCGAGGTGCTGAGCCGGGCGACGAACGACATCGACAACAT
CTCGCAGACGATGCAGCAGACGATGGGGCAGCTGATCAACTCGCTGCTGACCATCATCGGCGTGCTCGTGATGATGTTCT
GGATCTCGCCGCTGCTGGCACTGGTCGCACTGGTGACGGTGCCGCTGTCCGTAGTCGTGGCGGCGAAGGTCGGCAAGCGC
TCGCAGCCCCAGTTCGTCCAGCAGTGGAAGGTGACGGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCACAC
CCTGGTGAAGGTCTTCGGGCGGCAGGACGAGTCGGCGCGAGACTTCGCCGAGCAGAACGAAGCGCTGTACGAGGCCGGGT
TCAAGGCACAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTCATCGCCGTC
GTCGGCGGGCTGCGGGTCGCCTCGGGCGCGCTGTCGATCGGTGATGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTC
CATGCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGGTCCAGTCCGGGATCGCCTCGGCGGAGCGGATCTTCGAGCTGC
TGGACGCCGAGGAGCAGGACGCCGACCCGTCGAAGGGCGAGGGCGAGTTCCCCGGGGAGCTGCGCGGCAGCGTGTCCCTG
GAGAACGTGTCGTTCCGCTACGACCCGGAGAAGCCGCTCATCGAGGATCTCTCGCTGAGCGTCGAGCCGGGTCACACGGT
CGCGATCGTCGGCCCGACCGGTGCCGGCAAGACGACGCTGGTCAATCTCCTGATGCGGTTCTACGAGGTGACCGGGGGCC
GGATCGCCCTCGACGGGGTCGACATCGCGAAGATGTCGCGCGACGACCTGCGCTCGGGCATCGGCATGGTCCTCCAGGAC
ACCTGGCTGTTCGGCGGGACCATCGCGGAGAACATCGCCTACGGCGCGTCCGGCGACGTCACCCGGGAACAGATCGAGGA
GGCGGCCCGGGCGGCCCACGCCGACCGTTTCATCCGTACCCTGCCCGACGGGTACGACACGGTGATCGACGACGAGGGCT
CCGGTGTCAGCGCCGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATACTGGTGCTCGAC
GAGGCGACCAGCTCCGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCGGTCTCGCGCACGGCCGTACGAG
CTTCGTGATCGCGCACCGGCTCTCCACCATCCGGGACGCCGACGTCATCCTGGTGATGGAGAACGGGTCGATCGTCGAGC
AGGGCACGCACGACGGGCTGCTGGAGGCGCACGGCGCGTACGCCCGGCTGTACGCGGCACAGTTCGCGCAGGCGGTCGCC
GAGGTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(415-564)

ABC transporter transmembrane region (ABC_membrane)

(57-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.744

97.045

0.386