Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG959_RS21175 Genome accession   NZ_CP107951
Coordinates   4740944..4742356 (-) Length   470 a.a.
NCBI ID   WP_148020034.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00385     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4735944..4747356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG959_RS21155 (OG959_21165) - 4736647..4737291 (-) 645 WP_326660666.1 SigE family RNA polymerase sigma factor -
  OG959_RS21160 (OG959_21170) - 4737497..4738399 (-) 903 WP_326660668.1 A/G-specific adenine glycosylase -
  OG959_RS21165 (OG959_21175) - 4738779..4739561 (+) 783 WP_326666523.1 hypothetical protein -
  OG959_RS21170 (OG959_21180) disA 4739694..4740818 (-) 1125 WP_114245192.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG959_RS21175 (OG959_21185) radA/sms 4740944..4742356 (-) 1413 WP_148020034.1 DNA repair protein RadA Machinery gene
  OG959_RS21180 (OG959_21190) - 4742541..4744472 (+) 1932 WP_326660670.1 hypothetical protein -
  OG959_RS21185 (OG959_21195) - 4744487..4745335 (-) 849 WP_326660672.1 hypothetical protein -
  OG959_RS21190 (OG959_21200) - 4745420..4746370 (+) 951 WP_326660674.1 Ppx/GppA phosphatase family protein -
  OG959_RS21195 (OG959_21205) - 4746465..4747289 (+) 825 WP_326660676.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49394.48 Da        Isoelectric Point: 8.2515

>NTDB_id=650100 OG959_RS21175 WP_148020034.1 4740944..4742356(-) (radA/sms) [Streptomyces sp. NBC_00385]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTAEESASQVRMRADRIGAINDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISSLGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAYRLGFTHALVPTDPGKVPAGMKVTEVANMGDALRVLPRRSRAQAPQEDGARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=650100 OG959_RS21175 WP_148020034.1 4740944..4742356(-) (radA/sms) [Streptomyces sp. NBC_00385]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCGGTGCGCACCACGGCGGCCG
GCCGCGTCTCCACCGCCGCGCTCCCCATCGGTCAGGTCGACAGCCGCCAGGCCACCGCCCGCTCGACGGGCGTGGGTGAG
CTGGACCGGGTGCTGGGCGGCGGCCTGGTGCCCGGTGCCGTCGTGCTGCTCGCGGGCGAGCCCGGCGTGGGGAAGTCGAC
GCTGCTGCTGGACGTGGCGGCCAAGGCCGCGAGCGACGAGCACCGCACCTTGTACGTCACGGCGGAGGAGTCCGCCAGCC
AGGTCAGGATGCGTGCCGACCGGATCGGGGCGATCAACGACCATCTGTATCTGGCCGCCGAGACGGACCTGTCCGCGGTC
CTCGGCCATCTGGACGCCGTCAAGCCGTCCCTGCTCGTCCTGGACTCCGTACAGACCGTCGCCTCCCCCGAGATCGAGGG
CGCGCCCGGCGGGATGGCGCAGGTCCGCGAGGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGTATGTCGACCC
TGCTGGTCGGCCATGTCACCAAGGACGGCGCGATCGCCGGGCCCCGGCTGCTGGAGCACCTGGTCGACGTGGTGCTGTCG
TTCGAAGGCGACCGGCATGCCCGGCTCCGGCTCGTGCGCGGCGTCAAGAACCGTTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAGCTCCACGACGAGGGCATCACCGGCCTCGCCGACCCTTCCGGCCTCTTCCTCACCCGCCGCGACGAGCCCGTGC
CCGGCACCTGCCTGACCGTCACCCTGGAGGGCAAGCGCCCGCTGGTCGCCGAGGTGCAGGCCCTCACCGTCGACTCCCAG
ATCCCGTCGCCCCGGCGCACGACCTCGGGGCTGGAGACGTCCCGGGTCTCGATGATGCTGGCCGTCCTGGAGCAGCGCGG
CCGGATCAGCTCGCTGGGCAAACGGGACATCTACAGCGCCACGGTCGGCGGCGTGAAGCTCTCCGAACCGGCCGCGGACC
TCGCGATCGCGCTCGCCCTGGCCAGCGCGGCCAGCGACACACCCCTGCCGAAGAACCTGGTGGCGATCGGCGAGGTGGGG
CTCGCGGGCGAGGTCAGACGGGTCACCGGGGTCCAGCGCCGACTGGCCGAGGCGTACCGTCTGGGCTTCACGCACGCCCT
GGTCCCGACCGATCCGGGAAAGGTCCCGGCCGGTATGAAGGTCACAGAAGTGGCCAACATGGGCGATGCGCTCAGGGTGC
TCCCGCGCCGCTCTCGCGCACAGGCCCCACAGGAGGACGGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

AAA domain (AAA_25)

(84-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.15

96.383

0.426
  radA Streptococcus pneumoniae Rx1

42.384

96.383

0.409
  radA Streptococcus pneumoniae D39

42.384

96.383

0.409
  radA Streptococcus pneumoniae R6

42.384

96.383

0.409
  radA Streptococcus pneumoniae TIGR4

42.384

96.383

0.409
  radA Streptococcus mitis SK321

43.823

91.277

0.4
  radA Streptococcus mitis NCTC 12261

43.823

91.277

0.4