Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG959_RS00400 Genome accession   NZ_CP107951
Coordinates   91789..92811 (+) Length   340 a.a.
NCBI ID   WP_326655886.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00385     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 86789..97811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG959_RS00385 (OG959_00380) - 88082..88942 (+) 861 WP_326655882.1 methyltransferase domain-containing protein -
  OG959_RS00390 (OG959_00385) - 88961..89827 (-) 867 WP_326655884.1 helix-turn-helix domain-containing protein -
  OG959_RS00395 (OG959_00390) - 89895..91283 (-) 1389 WP_326655885.1 cellulase family glycosylhydrolase -
  OG959_RS00400 (OG959_00395) cytR 91789..92811 (+) 1023 WP_326655886.1 LacI family DNA-binding transcriptional regulator Regulator
  OG959_RS00405 (OG959_00400) - 93200..94291 (+) 1092 WP_326655887.1 lytic polysaccharide monooxygenase -
  OG959_RS00410 (OG959_00405) - 94409..94732 (-) 324 WP_326655889.1 alpha-L-rhamnosidase C-terminal domain-containing protein -
  OG959_RS00415 (OG959_00410) - 94827..95273 (-) 447 Protein_82 family 78 glycoside hydrolase catalytic domain -
  OG959_RS00420 (OG959_00415) - 95374..95460 (-) 87 Protein_83 hypothetical protein -
  OG959_RS00425 (OG959_00420) - 95486..96415 (-) 930 WP_326655892.1 LysR family transcriptional regulator -
  OG959_RS00430 (OG959_00425) - 96569..97306 (+) 738 WP_326666142.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37010.27 Da        Isoelectric Point: 8.0627

>NTDB_id=650047 OG959_RS00400 WP_326655886.1 91789..92811(+) (cytR) [Streptomyces sp. NBC_00385]
MLKRGSGTPTLEEVAALAGVGRGTVSRVINNASGVKASTRRAVQRAIDELDYVPNLAARSLAGRRADAVALVMTKTDWRL
FGEPFFSEVVRAVGDALTEADVQLLLTLVRTDAERQRLVKYVRGGRIDGALLMSVRAEDRLPDMLADAGLPTVLLGRRSD
EERVTYVDADNVGGARAAVAHLTRGGRKSIAAITGPPEMYASRCRLRGYREALRDAGLDEVQSLVVQGDFSEVSGRRAMT
GLIKRHPEVDGVFASSDSMAAGAVTALHTAGRRVPQDVAVIGFDDFELAEQTEPRLTTVRQPMEEIGRTMVRLLLEEMDQ
PQVAWRHVILRTQLVVRESA

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=650047 OG959_RS00400 WP_326655886.1 91789..92811(+) (cytR) [Streptomyces sp. NBC_00385]
ATGCTGAAGCGAGGTTCCGGCACACCGACGCTGGAGGAAGTGGCCGCGCTTGCCGGAGTGGGGCGGGGCACGGTCTCCCG
GGTGATCAACAACGCGTCGGGCGTCAAGGCGTCCACACGCCGTGCCGTGCAGCGCGCCATCGACGAACTGGACTACGTCC
CCAACCTCGCCGCGCGCTCACTGGCCGGCCGGCGCGCGGACGCCGTCGCACTGGTGATGACGAAGACGGACTGGCGGCTG
TTCGGCGAACCGTTCTTCTCGGAGGTCGTACGTGCGGTCGGGGACGCCCTGACCGAGGCGGACGTGCAACTGCTGCTCAC
GCTCGTCCGCACGGACGCCGAGCGGCAGCGGCTCGTGAAGTACGTGCGCGGCGGGCGGATCGACGGGGCGCTGCTCATGT
CCGTGCGCGCCGAGGACCGGCTGCCGGACATGCTCGCCGACGCCGGACTTCCCACGGTGCTGCTCGGCCGACGCTCGGAC
GAGGAACGGGTGACCTATGTGGACGCGGACAACGTGGGCGGCGCGCGGGCCGCGGTCGCCCATCTGACGCGCGGCGGACG
GAAGTCCATCGCCGCGATCACGGGCCCGCCCGAGATGTACGCCTCCCGGTGCAGGCTGCGCGGCTACCGGGAGGCGCTGC
GCGACGCCGGGCTCGACGAGGTGCAGTCCCTGGTCGTACAGGGGGACTTCAGCGAGGTCAGCGGACGGCGGGCGATGACC
GGGCTCATCAAGCGGCACCCGGAGGTCGACGGCGTCTTCGCCTCGTCGGACAGCATGGCCGCCGGGGCGGTGACCGCCCT
GCACACGGCGGGGCGCCGGGTCCCGCAGGATGTGGCGGTGATCGGCTTCGACGACTTCGAGCTGGCCGAGCAGACCGAAC
CGCGGCTGACGACGGTCCGCCAGCCGATGGAGGAGATCGGCCGGACCATGGTGCGGCTGCTGCTGGAGGAGATGGACCAG
CCGCAGGTCGCGTGGCGCCATGTGATCCTGCGGACGCAGCTGGTGGTGCGCGAGTCGGCCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(179-339)

Bacterial regulatory proteins, lacI family (LacI)

(10-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.838

100

0.365