Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG780_RS41295 Genome accession   NZ_CP107950
Coordinates   9441373..9442044 (+) Length   223 a.a.
NCBI ID   WP_328457119.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00386     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 9436373..9447044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG780_RS41280 (OG780_41265) - 9437572..9439467 (+) 1896 WP_328457113.1 BTAD domain-containing putative transcriptional regulator -
  OG780_RS41285 (OG780_41270) - 9439801..9440862 (-) 1062 WP_328457115.1 LuxR C-terminal-related transcriptional regulator -
  OG780_RS41290 (OG780_41275) - 9440961..9441149 (+) 189 WP_328457117.1 hypothetical protein -
  OG780_RS41295 (OG780_41280) dinR/lexA 9441373..9442044 (+) 672 WP_328457119.1 transcriptional repressor LexA Regulator
  OG780_RS41300 (OG780_41285) - 9442218..9442580 (+) 363 WP_328457121.1 DUF1330 domain-containing protein -
  OG780_RS41305 (OG780_41290) - 9442681..9443508 (+) 828 WP_328457123.1 class I SAM-dependent methyltransferase -
  OG780_RS41310 (OG780_41295) - 9444100..9444507 (+) 408 Protein_8162 carbohydrate binding domain-containing protein -
  OG780_RS41315 (OG780_41300) - 9444529..9445389 (-) 861 Protein_8163 IS5 family transposase -
  OG780_RS41320 (OG780_41305) - 9445551..9446108 (-) 558 WP_328458733.1 transposase -
  OG780_RS41325 (OG780_41310) - 9446105..9446644 (-) 540 WP_328457125.1 winged helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24088.47 Da        Isoelectric Point: 6.0226

>NTDB_id=650045 OG780_RS41295 WP_328457119.1 9441373..9442044(+) (dinR/lexA) [Streptomyces sp. NBC_00386]
MENSTPVRRGRPPGVQAVEGELTARQAAIVRYITESVARQGYPPSMREIGQAVELSSTSSVSHQLGALEHKGVLYRDPHR
PRAYRVRPSWAPDLAARSSKPAEVPLVGRIAAGAPLLADEMVEDVYFLPRQVVGEGELFALTVSGDSMIDAAICDGDIVT
VRKQDSAEHGDIVAALLEDEATVKVLHRQDGQVWLMPRNASFAPIPGDDARILGKVVGVLRVL

Nucleotide


Download         Length: 672 bp        

>NTDB_id=650045 OG780_RS41295 WP_328457119.1 9441373..9442044(+) (dinR/lexA) [Streptomyces sp. NBC_00386]
ATGGAGAACAGCACGCCAGTACGCCGGGGACGACCCCCGGGCGTACAGGCCGTCGAAGGTGAGCTGACGGCCCGCCAGGC
GGCCATCGTCCGCTACATCACCGAGTCGGTCGCGCGGCAGGGCTACCCGCCGTCGATGCGCGAGATCGGCCAGGCCGTGG
AGCTCTCCAGCACCAGCTCGGTCTCCCACCAACTGGGCGCACTGGAACACAAGGGTGTGCTCTACCGCGACCCGCACCGT
CCCCGCGCCTACCGTGTGCGCCCTTCCTGGGCCCCCGATCTCGCAGCCCGGAGCTCGAAGCCGGCCGAGGTGCCGCTCGT
CGGACGGATCGCGGCCGGCGCGCCCCTGCTCGCCGACGAGATGGTCGAGGACGTCTACTTCCTGCCCCGTCAGGTGGTCG
GGGAGGGGGAGCTGTTCGCCTTGACCGTGTCCGGCGACAGCATGATCGACGCGGCTATCTGCGACGGCGACATCGTGACC
GTCCGCAAGCAGGACAGCGCCGAGCACGGCGACATCGTCGCCGCTCTTCTGGAGGACGAGGCCACCGTCAAGGTCCTGCA
CCGGCAGGACGGACAGGTGTGGCTGATGCCGCGCAACGCGTCCTTCGCCCCGATCCCCGGTGACGACGCGCGCATTCTCG
GCAAGGTGGTCGGCGTCCTGCGCGTGCTCTAG

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(105-217)

LexA DNA binding domain (LexA_DNA_bind)

(21-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

42.927

91.928

0.395