Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG780_RS34480 Genome accession   NZ_CP107950
Coordinates   7842461..7843144 (+) Length   227 a.a.
NCBI ID   WP_328454805.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00386     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7837461..7848144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG780_RS34460 (OG780_34445) - 7837626..7838612 (-) 987 Protein_6793 NAD(P)/FAD-dependent oxidoreductase -
  OG780_RS34465 (OG780_34450) - 7838901..7839359 (+) 459 WP_328454800.1 MarR family winged helix-turn-helix transcriptional regulator -
  OG780_RS34470 (OG780_34455) - 7839437..7839886 (-) 450 WP_328454802.1 DUF5707 domain-containing protein -
  OG780_RS34475 (OG780_34460) - 7840125..7842464 (+) 2340 WP_328454804.1 histidine kinase -
  OG780_RS34480 (OG780_34465) vraR 7842461..7843144 (+) 684 WP_328454805.1 response regulator transcription factor Regulator
  OG780_RS34485 (OG780_34470) - 7843182..7843490 (+) 309 WP_328454806.1 hypothetical protein -
  OG780_RS34490 (OG780_34475) - 7843548..7844207 (-) 660 WP_328458598.1 response regulator transcription factor -
  OG780_RS34495 (OG780_34480) - 7844209..7845483 (-) 1275 WP_328454807.1 sensor domain-containing protein -
  OG780_RS34500 (OG780_34485) - 7845720..7845965 (+) 246 WP_328454808.1 hypothetical protein -
  OG780_RS34505 (OG780_34490) - 7845962..7846735 (+) 774 WP_328454809.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 23859.40 Da        Isoelectric Point: 5.5987

>NTDB_id=650035 OG780_RS34480 WP_328454805.1 7842461..7843144(+) (vraR) [Streptomyces sp. NBC_00386]
MSLRVLVVDDQGIVRAGFAAVIDAEEDMTVVGEAADGAQAVRLAQELAPDVVLMDVRMPEVDGIAATRIITGRPDAPRVL
VLTTFDLDAYVFDALRAGASGFLLKDVHPGELLSGIRVVATGESVLAPSATRRLIGHYASRPGTGLPDGSTARELKTLTD
RERGVLGLIAAGLTNTEIAEHLGITVGTVKSHVNALLRKLGLRDRVQATILAYDLGLAHPNPPHSPA

Nucleotide


Download         Length: 684 bp        

>NTDB_id=650035 OG780_RS34480 WP_328454805.1 7842461..7843144(+) (vraR) [Streptomyces sp. NBC_00386]
ATGAGCCTCAGGGTGCTGGTCGTCGACGACCAGGGCATCGTACGGGCGGGGTTCGCCGCCGTGATCGACGCCGAGGAGGA
CATGACGGTCGTCGGCGAGGCCGCCGACGGCGCCCAGGCGGTACGGCTCGCCCAGGAACTGGCACCCGACGTGGTCCTCA
TGGACGTCCGCATGCCCGAAGTGGACGGCATCGCCGCCACCCGGATCATCACCGGCCGCCCCGACGCACCCCGCGTCCTG
GTGCTGACCACCTTCGACCTCGACGCATACGTGTTCGACGCACTGCGCGCCGGCGCCTCCGGTTTCCTCCTCAAGGACGT
ACACCCCGGGGAACTGCTGAGCGGCATCCGGGTGGTGGCCACCGGCGAGAGCGTCCTCGCCCCGTCCGCCACCCGCCGGC
TCATCGGCCACTACGCGTCCAGGCCGGGCACCGGGCTCCCGGACGGCAGCACCGCTCGCGAGCTGAAGACCCTGACCGAC
CGTGAGCGCGGCGTCCTCGGCCTGATCGCCGCCGGACTCACCAACACGGAGATCGCCGAGCACCTCGGCATCACCGTCGG
CACGGTGAAGTCCCATGTCAACGCGCTGCTCCGCAAACTCGGACTGCGCGACCGGGTCCAGGCGACGATCCTCGCCTACG
ACCTCGGCCTCGCCCACCCCAACCCGCCGCACTCACCCGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-115)

Bacterial regulatory proteins, luxR family (GerE)

(157-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.356

96.476

0.37