Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG780_RS28190 Genome accession   NZ_CP107950
Coordinates   6436162..6437895 (-) Length   577 a.a.
NCBI ID   WP_328452769.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00386     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6431162..6442895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG780_RS28180 (OG780_28160) - 6432804..6434114 (+) 1311 WP_328452765.1 RNA polymerase sigma factor -
  OG780_RS28185 (OG780_28165) rcrQ 6434234..6436162 (-) 1929 WP_328452767.1 ABC transporter ATP-binding protein Regulator
  OG780_RS28190 (OG780_28170) rcrP 6436162..6437895 (-) 1734 WP_328452769.1 ABC transporter ATP-binding protein Regulator
  OG780_RS28195 (OG780_28175) - 6438065..6439519 (-) 1455 WP_328452771.1 FGGY family carbohydrate kinase -
  OG780_RS28200 (OG780_28180) - 6439680..6440636 (-) 957 WP_328444966.1 IS481 family transposase -
  OG780_RS28205 (OG780_28185) - 6440967..6441272 (-) 306 WP_326787975.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62676.92 Da        Isoelectric Point: 6.0736

>NTDB_id=650025 OG780_RS28190 WP_328452769.1 6436162..6437895(-) (rcrP) [Streptomyces sp. NBC_00386]
MLIRLLRTHLSPYKKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILTFGALMIGISLTQVVCNIGAVYYGA
RTASAVGRDIRGAVFDRVQSFSAREMGHFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIILALGLDVPLSAV
LVAVVPTLGICVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDGYEKDRFKGANTDLTETSLATGRMLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLGTESSVVP
PVAPVLELRRHGHLEIREAGFRYPGAEEPVLRSVDLVAQPGEVTAVIGSTGSGKSTLLGMIPRLFDATDGQVLVDGVDVA
TIDPKLLARTVGLVPQKPYLFAGTVATNLRYGNPEATDEELWHALEVAQAKGFVEQLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALTEETAEATVVIVAQRVSTIREADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=650025 OG780_RS28190 WP_328452769.1 6436162..6437895(-) (rcrP) [Streptomyces sp. NBC_00386]
GTGCTCATACGACTCCTGCGGACCCACCTCAGTCCGTACAAGAAACCCATCGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACCCTCAACGCGCACATCATCGACAACGGTGTCGTGAAGGGTGACACGGGTTACA
TCCTGACCTTCGGCGCCCTGATGATCGGCATCTCGCTGACCCAGGTCGTCTGCAACATCGGGGCCGTCTACTACGGAGCC
CGTACGGCGTCCGCGGTGGGCCGGGACATCCGGGGCGCCGTCTTCGACCGCGTGCAGTCGTTCTCGGCACGTGAGATGGG
CCACTTCGGCGCGCCGTCGCTGATCACCCGCACCACCAACGACGTCCAGCAGGTGCAGATGCTCGCACTGATGACGTTCA
CCCTGCTGGTGTCGGCGCCGATCATGTGTGTGGGCGGCATCATCCTGGCCCTCGGCCTGGACGTGCCGCTGTCCGCGGTG
CTCGTCGCCGTGGTGCCGACGCTCGGCATCTGCGTGACGCTCATCGTGCGCCGGCTGCGCCCGCTGTTCCGCACCATGCA
GGTGCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAATCGCGTGATCCGCGCGTTCGTGCGCGACG
GCTACGAGAAGGACCGTTTCAAGGGCGCCAACACCGACCTCACGGAGACGTCGCTGGCCACCGGCCGGATGCTGGCCCTG
ATGTTCCCGATCGTCATGACGGTGGTGAACCTGTCGTCCATCGCGGTGGTCTGGTTCGGTGCCCACCGCATCGACAGCGG
CGGTATGCAGATCGGCGATCTGACCGCGTTCCTGGCCTACCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGGCACCGAGAGCAGCGTGGTCCCG
CCCGTCGCGCCCGTCCTGGAGCTGCGCCGGCACGGCCACCTGGAGATCCGCGAGGCCGGGTTCCGCTACCCGGGCGCCGA
GGAGCCGGTCCTGAGGTCCGTCGACCTGGTCGCGCAGCCCGGTGAGGTCACCGCGGTCATCGGTTCGACCGGCAGCGGCA
AGTCGACGCTGCTCGGCATGATCCCCCGCCTGTTCGACGCCACCGACGGCCAAGTGCTCGTCGACGGCGTGGACGTCGCG
ACCATCGACCCGAAGCTGCTGGCCAGGACGGTCGGACTGGTCCCGCAGAAGCCCTACCTGTTCGCGGGGACGGTCGCCAC
GAACCTGCGGTACGGCAACCCGGAGGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TGGAACAGCTCGAGAACGGGCTGGACTCGCCGATCGCGCAGGGCGGCACGAACGTGTCCGGCGGCCAGCGCCAGCGCCTG
GCGATCGCCCGCACCCTCGTGCAGCGCCCCGAGATCTACCTGTTCGACGACTCCTTCTCGGCCCTCGACTACGCGACCGA
CGCGGCGCTGCGCGCGGCGCTCACCGAGGAGACCGCCGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCA
GGGAGGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGACGCCACCACGAACTGATGGCGGACAAC
GAGACCTATCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.347

100

0.397