Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG780_RS28185 Genome accession   NZ_CP107950
Coordinates   6434234..6436162 (-) Length   642 a.a.
NCBI ID   WP_328452767.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00386     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6429234..6441162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG780_RS28170 (OG780_28150) - 6429262..6430527 (+) 1266 WP_328452761.1 FAD-dependent oxidoreductase -
  OG780_RS28175 (OG780_28155) dnaG 6430673..6432577 (+) 1905 WP_328452763.1 DNA primase -
  OG780_RS28180 (OG780_28160) - 6432804..6434114 (+) 1311 WP_328452765.1 RNA polymerase sigma factor -
  OG780_RS28185 (OG780_28165) rcrQ 6434234..6436162 (-) 1929 WP_328452767.1 ABC transporter ATP-binding protein Regulator
  OG780_RS28190 (OG780_28170) rcrP 6436162..6437895 (-) 1734 WP_328452769.1 ABC transporter ATP-binding protein Regulator
  OG780_RS28195 (OG780_28175) - 6438065..6439519 (-) 1455 WP_328452771.1 FGGY family carbohydrate kinase -
  OG780_RS28200 (OG780_28180) - 6439680..6440636 (-) 957 WP_328444966.1 IS481 family transposase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69419.72 Da        Isoelectric Point: 6.2056

>NTDB_id=650024 OG780_RS28185 WP_328452767.1 6434234..6436162(-) (rcrQ) [Streptomyces sp. NBC_00386]
MAGPMGRMMAGGGPDQRSMDFKVSGRRLLTQFKPERATLYVMLVTVVLSVGLSVVGPKILGRATDLVFSGIVGRQMPAGA
TKAQALDSLRAHGKGGVADMLSGTDFTPGQGIDFTAVGHVLLLALCTFLLAGLLMAVATRLVNRSVNRTVYRMREDLQAK
LSRLPLSYFDKRQRGEVLSRATNDMDNIQQTLQQSMGQLVNSLLTIVGVLAMMFWVSPLLALVALVTVPLSFVVATRVGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHNLVKVFGRAEESAAQFAEQNDKLYEAGFRAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFEVLDADEQEADPTVSARPEELRGRVALE
NVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVTGGRITLDGVDVTSMSRDDLRSGIGMVLQDT
WLFGGTIADNIAYGASRDVTRGEIEEAARAAHADRFIRTLPQGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMEDGAIVEQGAHADLLESGGAYARLYQAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=650024 OG780_RS28185 WP_328452767.1 6434234..6436162(-) (rcrQ) [Streptomyces sp. NBC_00386]
ATGGCCGGGCCGATGGGGCGCATGATGGCCGGGGGCGGCCCTGACCAGCGCTCGATGGATTTCAAGGTGTCGGGCCGACG
GCTCCTCACCCAGTTCAAGCCCGAGCGCGCCACGCTGTACGTGATGCTGGTCACCGTCGTGCTGAGCGTCGGCCTCTCGG
TGGTCGGCCCGAAGATCCTCGGCAGGGCCACCGACCTGGTCTTCTCGGGGATCGTCGGCCGCCAGATGCCGGCCGGGGCC
ACCAAGGCCCAGGCTCTCGACTCGCTGCGCGCGCACGGCAAGGGCGGCGTCGCCGACATGCTCTCGGGGACGGACTTCAC
CCCCGGCCAGGGCATCGACTTCACCGCCGTCGGGCACGTCCTGCTGCTCGCGCTCTGCACGTTCCTGCTGGCCGGACTGC
TGATGGCGGTGGCGACGCGGCTGGTGAACCGGTCCGTCAACAGGACCGTCTACCGCATGCGCGAGGACCTGCAGGCGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGTGAGGTGCTCAGCCGCGCGACGAACGACATGGACAA
CATCCAGCAGACCCTCCAGCAGTCGATGGGCCAGCTCGTCAACTCGCTGCTGACCATCGTGGGCGTCCTCGCGATGATGT
TCTGGGTGTCGCCGCTGCTGGCGCTCGTCGCGCTGGTCACGGTGCCGCTGTCGTTCGTCGTGGCCACCCGGGTCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGCCA
CAACCTGGTGAAGGTGTTCGGGCGGGCGGAGGAGTCGGCGGCGCAGTTCGCCGAGCAGAACGACAAGCTGTACGAGGCCG
GTTTCCGGGCGCAGTTCAACAGCGGCGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGGTGGCC
GTCGTCGGCGGGCTGCGGGTGGCCTCGGGCTCGCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCCCGCCAGTT
CTCGATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGTGTCGCGTCGGCGGAGCGGGTCTTCGAGG
TCCTGGACGCGGACGAGCAGGAGGCGGACCCGACGGTGTCGGCCCGTCCCGAGGAACTGCGCGGGCGCGTGGCGCTGGAG
AACGTCTCCTTCCGGTACGACCCGGAGAAGCCGCTCATCGAGGACCTCTCGCTGAAGGTGGAGCCGGGCCACACGGTGGC
CATCGTCGGCCCGACCGGCGCCGGCAAGACGACCCTGGTGAACCTGCTCATGCGGTTCTACGACGTCACCGGCGGCCGGA
TCACCCTCGACGGGGTCGACGTGACCTCCATGTCCCGGGACGACCTGCGGTCGGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGGGGCACGATCGCCGACAACATCGCGTACGGGGCCTCGCGGGACGTCACCCGCGGGGAGATCGAGGAGGC
GGCGCGCGCGGCGCACGCCGACCGGTTCATCCGCACGCTGCCCCAGGGCTACGACACGGTGATCGACGACGAGGGATCGG
GGGTCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCCCGTGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAG
GCGACCAGCTCCGTCGACACCCGCACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGGCGGACCTCGTT
CGTGATCGCCCACCGTCTGTCGACCATCCGGGACGCCGACACCATCCTCGTGATGGAGGACGGCGCCATCGTGGAACAGG
GCGCCCACGCGGACCTGCTGGAGTCCGGCGGCGCCTACGCCCGCCTCTACCAGGCCCAGTTCGCCCAGGCGGTCGCCGAG
GTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(41-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.644

96.262

0.382