Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG780_RS15425 Genome accession   NZ_CP107950
Coordinates   3549676..3550290 (-) Length   204 a.a.
NCBI ID   WP_328448571.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00386     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3544676..3555290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG780_RS15400 (OG780_15385) - 3545367..3545810 (+) 444 WP_328448565.1 ATP-binding protein -
  OG780_RS15405 (OG780_15390) - 3545923..3547017 (-) 1095 WP_326785686.1 bifunctional succinyldiaminopimelate transaminase/glutamate-prephenate aminotransferase -
  OG780_RS15410 (OG780_15395) fdxA 3547199..3547519 (-) 321 WP_030573070.1 ferredoxin -
  OG780_RS15415 (OG780_15400) - 3547661..3548785 (+) 1125 WP_328448567.1 GNAT family N-acetyltransferase -
  OG780_RS15420 (OG780_15405) - 3548803..3549654 (+) 852 WP_328448569.1 transglutaminase-like domain-containing protein -
  OG780_RS15425 (OG780_15410) vraR 3549676..3550290 (-) 615 WP_328448571.1 response regulator transcription factor Regulator
  OG780_RS15430 (OG780_15415) - 3550287..3551507 (-) 1221 WP_328458146.1 histidine kinase -
  OG780_RS15435 (OG780_15420) - 3551513..3552253 (-) 741 WP_328448573.1 ABC transporter permease -
  OG780_RS15440 (OG780_15425) - 3552250..3553248 (-) 999 WP_328448575.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 21574.90 Da        Isoelectric Point: 5.3792

>NTDB_id=649992 OG780_RS15425 WP_328448571.1 3549676..3550290(-) (vraR) [Streptomyces sp. NBC_00386]
MSRTIKVLLAEDQSMVREALAALLGLEPDIEVVAQVARGDEVLAAARAHDVDVALLDIEMPGMTGIEAAAEVHKELPGIK
LIVLTTFGRPGYLRSAMESGADAFLVKDAPAAQLAAAVRKVLAGERVIDPTLAAAALAEGANPLTDREREVLRAAADGST
NAELAKALHLSQGTVRNYLSTAIQKLAVRNRAEAVRIAREKGWL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=649992 OG780_RS15425 WP_328448571.1 3549676..3550290(-) (vraR) [Streptomyces sp. NBC_00386]
ATGAGCCGCACGATCAAGGTCCTGCTCGCCGAGGACCAGTCGATGGTCCGCGAAGCGCTGGCCGCCCTGCTGGGACTGGA
GCCGGACATCGAGGTGGTCGCCCAGGTGGCCCGCGGCGACGAGGTCCTGGCGGCGGCCCGCGCCCACGACGTGGACGTGG
CGCTCCTCGACATCGAGATGCCGGGCATGACCGGCATAGAGGCGGCGGCCGAGGTCCACAAGGAGCTCCCGGGCATCAAG
CTGATCGTCCTCACCACCTTCGGCCGCCCCGGATACCTGCGCAGCGCCATGGAGTCCGGCGCCGACGCCTTCCTGGTCAA
GGACGCCCCGGCCGCCCAACTCGCCGCGGCCGTACGCAAGGTGCTGGCCGGCGAGCGCGTCATCGACCCCACCCTGGCGG
CGGCCGCGCTCGCCGAGGGCGCCAACCCCCTGACCGACCGCGAGCGCGAGGTCCTCCGCGCCGCCGCCGACGGCTCCACC
AACGCCGAACTGGCCAAGGCCCTCCACCTCTCCCAGGGCACGGTCCGCAACTACCTCTCGACCGCGATCCAGAAACTCGC
GGTACGCAACCGGGCGGAGGCGGTACGGATCGCACGGGAGAAGGGCTGGCTGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(143-198)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.232

100

0.368