Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG780_RS11625 Genome accession   NZ_CP107950
Coordinates   2688430..2689206 (+) Length   258 a.a.
NCBI ID   WP_081219793.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00386     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2683430..2694206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG780_RS11615 (OG780_11605) - 2684298..2687195 (-) 2898 WP_328447322.1 vitamin B12-dependent ribonucleotide reductase -
  OG780_RS11620 (OG780_11610) nrdR 2687358..2687909 (-) 552 WP_328447324.1 transcriptional regulator NrdR -
  OG780_RS11625 (OG780_11615) dinR/lexA 2688430..2689206 (+) 777 WP_081219793.1 transcriptional repressor LexA Regulator
  OG780_RS11630 (OG780_11620) - 2689338..2691380 (-) 2043 WP_328447327.1 ATP-dependent DNA helicase -
  OG780_RS11635 (OG780_11625) - 2691647..2692498 (-) 852 WP_328447329.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 27949.65 Da        Isoelectric Point: 7.4755

>NTDB_id=649982 OG780_RS11625 WP_081219793.1 2688430..2689206(+) (dinR/lexA) [Streptomyces sp. NBC_00386]
MTTTADSATITAQDRSQGRLEPVHAMNEAANHEGPKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDV
FPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYQPI
PGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 777 bp        

>NTDB_id=649982 OG780_RS11625 WP_081219793.1 2688430..2689206(+) (dinR/lexA) [Streptomyces sp. NBC_00386]
GTGACCACCACCGCAGACAGCGCCACCATCACCGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCGCGAATCATGAGGGGCCAAAGCGCTCCCTGCCTGGCCGACCTCCAGGCATCCGGGCCGACAGCTCGGGACTCA
CGGACCGGCAGCGCCGGGTGATCGAGGTGATCCGGGACTCCGTGCAGCGGCGCGGCTACCCGCCGTCGATGCGGGAGATC
GGGCAGGCCGTCGGCCTCTCCAGCACCTCCTCCGTCGCACACCAGCTGATGGCATTGGAGCGCAAGGGCTTCCTGCGGCG
AGATCCGCACCGCCCGCGCGCGTACGAGGTACGGGGGTCCGACCAGTCGTCGGTGCAGCCGACGGACACGGCGGGCAAGC
CGGCCGCGTCCTACGTTCCGCTCGTCGGCCGTATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCGGTGGAGGACGTG
TTCCCCCTCCCCCGCCAGCTCGTCGGAGACGGGGAACTGTTCGTCCTGAAGGTCGTCGGTGACTCGATGATCGAGGCCGC
CATCTGCGACGGGGACTGGGTGACGGTCCGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTCGCCGCGATGCTGGACG
GCGAAGCCACGGTGAAGCGATTCAAGCGCGAGGACGGACACGTGTGGCTGCTGCCGCACAACTCGGCGTACCAGCCGATC
CCCGGTGACGAGGCGACCATCCTCGGAAAGGTCGTCGCCGTGCTGCGCCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(140-252)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.714

81.395

0.372