Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG780_RS11355 Genome accession   NZ_CP107950
Coordinates   2624499..2625185 (-) Length   228 a.a.
NCBI ID   WP_328447226.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00386     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2619499..2630185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG780_RS11330 (OG780_11320) - 2619726..2620589 (-) 864 WP_328447216.1 ABC transporter permease -
  OG780_RS11335 (OG780_11325) - 2620579..2621394 (-) 816 WP_328447218.1 ABC transporter ATP-binding protein -
  OG780_RS11340 (OG780_11330) - 2621556..2622248 (+) 693 WP_328447220.1 response regulator -
  OG780_RS11345 (OG780_11335) - 2622316..2623908 (-) 1593 WP_328447222.1 cation acetate symporter -
  OG780_RS11350 (OG780_11340) - 2623905..2624393 (-) 489 WP_328447224.1 DUF485 domain-containing protein -
  OG780_RS11355 (OG780_11345) vraR 2624499..2625185 (-) 687 WP_328447226.1 response regulator transcription factor Regulator
  OG780_RS11360 (OG780_11350) - 2625182..2626333 (-) 1152 WP_328447228.1 histidine kinase -
  OG780_RS11365 (OG780_11355) - 2626330..2626857 (-) 528 WP_328447230.1 DUF1453 domain-containing protein -
  OG780_RS11370 (OG780_11360) - 2627515..2629638 (-) 2124 WP_328447232.1 DNA topoisomerase IV subunit B -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 24160.59 Da        Isoelectric Point: 4.8947

>NTDB_id=649981 OG780_RS11355 WP_328447226.1 2624499..2625185(-) (vraR) [Streptomyces sp. NBC_00386]
MTERAEGRAPARVVVADDQTVVREGIVMLLGLLPGIEVVGAAGDGAEAVELVAELAPDVVLMDLRMPRCDGVEATRRIRA
EHPGTQVVVLTTFADDESLFPALRAGARGYLTKDAGGDEIVRAVESVLSGDAGLSPSIQRRLLERLSDPEPEPGPPPEAP
DGLTSRETEVLLLIAEGLSNHEIARKLHVSTATVKTHINNLFAKAGLKDRAQAVRYAYGKGLVRPPAG

Nucleotide


Download         Length: 687 bp        

>NTDB_id=649981 OG780_RS11355 WP_328447226.1 2624499..2625185(-) (vraR) [Streptomyces sp. NBC_00386]
ATGACCGAGCGGGCGGAGGGCAGGGCACCGGCGCGGGTCGTGGTCGCGGACGATCAGACGGTCGTGCGCGAGGGCATTGT
GATGCTGCTGGGACTGCTGCCCGGGATCGAGGTCGTCGGAGCGGCCGGTGACGGGGCCGAGGCGGTGGAGCTGGTGGCCG
AACTCGCCCCGGACGTCGTGCTGATGGATCTGCGCATGCCTCGATGCGACGGGGTCGAGGCGACCCGGCGCATCCGTGCC
GAGCATCCCGGGACCCAGGTCGTCGTGCTCACGACGTTCGCGGACGACGAGTCGCTGTTCCCCGCGCTGCGCGCCGGAGC
CCGCGGCTATCTGACCAAGGACGCGGGAGGCGACGAGATCGTGCGGGCCGTGGAGAGCGTGCTCTCCGGAGACGCGGGGC
TCTCGCCGAGCATCCAACGACGGCTGCTGGAGCGGCTGTCGGACCCGGAACCGGAGCCCGGCCCGCCTCCGGAGGCCCCG
GACGGGCTCACCTCGCGCGAGACGGAGGTGCTCCTGCTCATCGCCGAGGGCCTCAGCAACCACGAGATCGCTCGCAAGCT
CCATGTGTCCACGGCCACCGTGAAGACCCACATCAACAATCTCTTCGCCAAGGCAGGTCTCAAAGACCGTGCTCAAGCAG
TCCGTTACGCCTATGGGAAAGGTCTCGTACGGCCGCCCGCGGGATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(162-217)

Response regulator receiver domain (Response_reg)

(13-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.967

93.421

0.364