Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | OG780_RS09985 | Genome accession | NZ_CP107950 |
| Coordinates | 2288523..2291096 (-) | Length | 857 a.a. |
| NCBI ID | WP_328446760.1 | Uniprot ID | - |
| Organism | Streptomyces sp. NBC_00386 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2283523..2296096
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OG780_RS09965 (OG780_09965) | - | 2284251..2284898 (-) | 648 | Protein_1985 | phosphatase PAP2 family protein | - |
| OG780_RS09970 (OG780_09970) | - | 2285016..2287337 (-) | 2322 | WP_328446754.1 | FdhF/YdeP family oxidoreductase | - |
| OG780_RS09975 (OG780_09975) | - | 2287615..2288079 (+) | 465 | WP_328446756.1 | GreA/GreB family elongation factor | - |
| OG780_RS09980 (OG780_09980) | - | 2288149..2288427 (-) | 279 | WP_326784802.1 | hypothetical protein | - |
| OG780_RS09985 (OG780_09985) | clpC | 2288523..2291096 (-) | 2574 | WP_328446760.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| OG780_RS09990 (OG780_09990) | - | 2291331..2292281 (-) | 951 | WP_328446762.1 | family 1 encapsulin nanocompartment shell protein | - |
| OG780_RS09995 (OG780_09995) | - | 2292278..2293312 (-) | 1035 | WP_328446764.1 | Dyp-type peroxidase | - |
| OG780_RS10000 (OG780_10000) | - | 2293457..2294092 (-) | 636 | WP_328446766.1 | DUF1345 domain-containing protein | - |
| OG780_RS10005 (OG780_10005) | - | 2294176..2294661 (-) | 486 | WP_328446768.1 | PaaI family thioesterase | - |
| OG780_RS10010 (OG780_10010) | - | 2294782..2295144 (+) | 363 | Protein_1994 | helix-turn-helix domain-containing protein | - |
Sequence
Protein
Download Length: 857 a.a. Molecular weight: 92763.27 Da Isoelectric Point: 4.8268
>NTDB_id=649978 OG780_RS09985 WP_328446760.1 2288523..2291096(-) (clpC) [Streptomyces sp. NBC_00386]
MSMSSYGFGSSDPFGELLNRFFGMSPASSPPAVQRVPIGRLLTESSQELLNLAARRAQQDGTSDLDTEHLLWAATKVEPA
RSLLARAELDPDALAAQLAEVLPRESSEPSSEPGLTPAAKRTLAAAYARSQAAGVSYIGPEHILAALLGDADTGAAQLLR
ADGQDAQKLAGLTERTARPEGRPAEPDKPATTLDEFGRDLTEEAKAGRLDPVVGRAEQIEQTIEILSRRSKNNPVLIGEP
GVGKTAIVEGLAQRIVSGDVPDTLKGKRVVSLDMSGMVAGAQYRGQFEERLKKVIEDVQASEGEIVLFIDELHTVVGAGA
TGEGSMDAGNMLKPALARGELHVVGATTIDEYRKYVEKDAALERRFQPVMVPEPTVEETVQILEGLRDAYEAHHQVRFAD
GALAAAAELSDRYISDRFLPDKAIDVMDQAGARVRLRGAVRSTEVAEREDRVAKLRRERDQAVAAEDFERAGQLKGRITE
TEGELAGIEERRAGVVSVTARDIADVVSRRTGIPVSQLTASEKEKLLKLEEEMHSRIVGQDEAVTAVSQAVRRNRAGMGD
PNRPVGSFLFLGPTGVGKTELAKTLAEQLFGDESRMVRFDMSEFQEKHTVARLVGAPPGYVGYDEAGQLTEKVRRQPYSV
VLFDEVEKAHPDVFNTLLQILDDGRLTDGQGRTVDFRHCVVIMTSNIGAHRILDHKGDVSDLKDALMDELRTRFLPEFLN
RIDDIIIFHGLKEDDLAQIVEHLLGRSERRVRAQGMKLEVTEAAKKLLVAHGHQPEFGARPLRRTIQTELDNGIAELLLG
GEAEPGDTIVADDRDGSVRCTVRKGAGGNSAPDEGPSGDGAEAERGSAVPAGDTGHD
MSMSSYGFGSSDPFGELLNRFFGMSPASSPPAVQRVPIGRLLTESSQELLNLAARRAQQDGTSDLDTEHLLWAATKVEPA
RSLLARAELDPDALAAQLAEVLPRESSEPSSEPGLTPAAKRTLAAAYARSQAAGVSYIGPEHILAALLGDADTGAAQLLR
ADGQDAQKLAGLTERTARPEGRPAEPDKPATTLDEFGRDLTEEAKAGRLDPVVGRAEQIEQTIEILSRRSKNNPVLIGEP
GVGKTAIVEGLAQRIVSGDVPDTLKGKRVVSLDMSGMVAGAQYRGQFEERLKKVIEDVQASEGEIVLFIDELHTVVGAGA
TGEGSMDAGNMLKPALARGELHVVGATTIDEYRKYVEKDAALERRFQPVMVPEPTVEETVQILEGLRDAYEAHHQVRFAD
GALAAAAELSDRYISDRFLPDKAIDVMDQAGARVRLRGAVRSTEVAEREDRVAKLRRERDQAVAAEDFERAGQLKGRITE
TEGELAGIEERRAGVVSVTARDIADVVSRRTGIPVSQLTASEKEKLLKLEEEMHSRIVGQDEAVTAVSQAVRRNRAGMGD
PNRPVGSFLFLGPTGVGKTELAKTLAEQLFGDESRMVRFDMSEFQEKHTVARLVGAPPGYVGYDEAGQLTEKVRRQPYSV
VLFDEVEKAHPDVFNTLLQILDDGRLTDGQGRTVDFRHCVVIMTSNIGAHRILDHKGDVSDLKDALMDELRTRFLPEFLN
RIDDIIIFHGLKEDDLAQIVEHLLGRSERRVRAQGMKLEVTEAAKKLLVAHGHQPEFGARPLRRTIQTELDNGIAELLLG
GEAEPGDTIVADDRDGSVRCTVRKGAGGNSAPDEGPSGDGAEAERGSAVPAGDTGHD
Nucleotide
Download Length: 2574 bp
>NTDB_id=649978 OG780_RS09985 WP_328446760.1 2288523..2291096(-) (clpC) [Streptomyces sp. NBC_00386]
ATGTCGATGTCGTCCTACGGTTTCGGCTCGTCCGACCCCTTCGGTGAACTGCTGAACCGCTTCTTCGGGATGTCGCCCGC
GTCGTCTCCTCCGGCGGTGCAGCGCGTGCCCATCGGACGGCTGCTGACGGAGTCCTCGCAGGAACTCCTGAACCTGGCCG
CACGGCGGGCCCAGCAGGACGGGACGTCGGATCTCGACACCGAGCACCTGCTGTGGGCCGCCACGAAGGTGGAACCCGCC
CGCTCCCTGCTGGCCCGCGCGGAGCTGGACCCCGACGCGCTCGCCGCGCAGCTGGCCGAGGTCCTCCCCCGGGAGAGCAG
CGAACCGTCCTCGGAGCCGGGGCTGACCCCGGCGGCCAAACGCACCCTCGCCGCCGCGTACGCCCGCTCGCAGGCGGCCG
GGGTGTCCTACATCGGCCCCGAGCACATCCTCGCCGCCCTGCTGGGGGACGCCGACACCGGTGCCGCCCAGCTCCTGCGG
GCCGACGGACAGGACGCGCAGAAGCTGGCGGGTCTCACGGAACGGACGGCCCGTCCCGAAGGCCGTCCCGCCGAGCCCGA
CAAGCCCGCCACGACCCTCGACGAGTTCGGACGGGACCTGACGGAAGAGGCGAAGGCCGGCCGGCTCGACCCGGTCGTCG
GACGCGCCGAGCAGATCGAGCAGACCATCGAGATCCTCTCGCGGCGCTCCAAGAACAACCCCGTGCTGATCGGTGAGCCG
GGCGTTGGCAAGACCGCGATCGTCGAAGGACTCGCGCAGCGCATCGTCTCCGGTGACGTCCCGGACACCCTCAAGGGCAA
GCGCGTCGTCTCCCTCGATATGTCCGGCATGGTGGCGGGAGCCCAGTACCGCGGACAGTTCGAGGAGCGGCTGAAGAAGG
TCATCGAGGACGTCCAGGCGTCGGAGGGAGAGATCGTTCTCTTCATCGACGAACTGCACACGGTCGTCGGCGCGGGCGCG
ACGGGCGAGGGCTCCATGGACGCGGGCAACATGCTCAAACCCGCTCTGGCCCGCGGGGAACTGCACGTGGTGGGTGCGAC
GACCATCGACGAGTACCGCAAGTACGTCGAGAAGGACGCCGCGCTCGAACGCCGCTTCCAGCCGGTGATGGTGCCGGAGC
CGACGGTCGAGGAGACCGTGCAGATCCTGGAGGGCCTGCGCGACGCGTACGAGGCGCACCACCAGGTCCGCTTCGCCGAC
GGCGCCCTGGCCGCGGCGGCGGAACTGTCCGACCGCTACATCAGCGACCGGTTCCTGCCCGACAAGGCGATCGACGTGAT
GGACCAGGCGGGCGCCCGGGTGCGGCTGCGCGGCGCCGTCCGCTCGACCGAGGTCGCCGAACGCGAGGACCGCGTCGCGA
AGCTGCGCCGTGAACGCGATCAGGCCGTGGCCGCCGAGGACTTCGAGCGCGCGGGGCAGCTCAAGGGACGGATCACCGAG
ACGGAGGGCGAGCTCGCCGGCATCGAGGAGCGGCGCGCCGGTGTCGTCTCCGTGACCGCCCGTGACATCGCGGACGTCGT
CTCCCGCCGCACCGGCATCCCGGTGTCCCAACTCACCGCCAGCGAGAAGGAGAAGCTCCTGAAGCTGGAGGAGGAGATGC
ACTCCCGGATCGTCGGCCAGGACGAGGCGGTCACCGCCGTCTCGCAGGCGGTACGCCGCAACCGGGCCGGCATGGGCGAT
CCGAACCGCCCCGTGGGCTCCTTCCTCTTCCTCGGCCCCACCGGCGTGGGCAAGACGGAACTGGCCAAGACCCTCGCCGA
GCAGCTCTTCGGCGACGAGAGCCGCATGGTCCGCTTCGACATGAGCGAGTTCCAGGAGAAGCACACGGTCGCCCGTCTCG
TCGGGGCGCCTCCGGGATACGTCGGTTACGACGAGGCGGGGCAGCTCACCGAGAAGGTCCGCAGACAGCCGTACAGCGTC
GTCCTGTTCGACGAGGTGGAGAAGGCGCACCCCGATGTCTTCAACACGCTGCTCCAGATCCTCGACGACGGGCGCCTGAC
GGACGGTCAGGGCCGCACCGTCGACTTCCGGCACTGCGTCGTCATCATGACGTCCAACATCGGCGCGCACCGCATCCTGG
ACCACAAGGGCGATGTGTCCGATCTCAAGGACGCGTTGATGGACGAGCTGCGGACCCGGTTCCTGCCCGAGTTCCTCAAC
CGCATCGACGACATCATCATCTTCCACGGCCTGAAGGAGGACGATCTGGCGCAGATCGTCGAGCATCTCCTCGGCCGGAG
CGAACGCCGGGTGCGCGCGCAGGGCATGAAGCTGGAGGTGACCGAGGCGGCCAAGAAGCTGCTGGTCGCCCACGGCCATC
AACCGGAGTTCGGTGCCCGCCCGTTGAGGCGCACGATCCAGACGGAGCTCGACAACGGCATCGCGGAGCTGCTGCTCGGC
GGCGAGGCCGAACCCGGCGACACGATCGTCGCCGACGACCGGGACGGCTCCGTTCGCTGCACCGTGCGCAAGGGTGCCGG
GGGCAACAGCGCCCCGGACGAGGGGCCTTCGGGCGACGGCGCGGAGGCGGAGCGGGGGAGCGCGGTGCCCGCCGGCGACA
CAGGCCACGACTGA
ATGTCGATGTCGTCCTACGGTTTCGGCTCGTCCGACCCCTTCGGTGAACTGCTGAACCGCTTCTTCGGGATGTCGCCCGC
GTCGTCTCCTCCGGCGGTGCAGCGCGTGCCCATCGGACGGCTGCTGACGGAGTCCTCGCAGGAACTCCTGAACCTGGCCG
CACGGCGGGCCCAGCAGGACGGGACGTCGGATCTCGACACCGAGCACCTGCTGTGGGCCGCCACGAAGGTGGAACCCGCC
CGCTCCCTGCTGGCCCGCGCGGAGCTGGACCCCGACGCGCTCGCCGCGCAGCTGGCCGAGGTCCTCCCCCGGGAGAGCAG
CGAACCGTCCTCGGAGCCGGGGCTGACCCCGGCGGCCAAACGCACCCTCGCCGCCGCGTACGCCCGCTCGCAGGCGGCCG
GGGTGTCCTACATCGGCCCCGAGCACATCCTCGCCGCCCTGCTGGGGGACGCCGACACCGGTGCCGCCCAGCTCCTGCGG
GCCGACGGACAGGACGCGCAGAAGCTGGCGGGTCTCACGGAACGGACGGCCCGTCCCGAAGGCCGTCCCGCCGAGCCCGA
CAAGCCCGCCACGACCCTCGACGAGTTCGGACGGGACCTGACGGAAGAGGCGAAGGCCGGCCGGCTCGACCCGGTCGTCG
GACGCGCCGAGCAGATCGAGCAGACCATCGAGATCCTCTCGCGGCGCTCCAAGAACAACCCCGTGCTGATCGGTGAGCCG
GGCGTTGGCAAGACCGCGATCGTCGAAGGACTCGCGCAGCGCATCGTCTCCGGTGACGTCCCGGACACCCTCAAGGGCAA
GCGCGTCGTCTCCCTCGATATGTCCGGCATGGTGGCGGGAGCCCAGTACCGCGGACAGTTCGAGGAGCGGCTGAAGAAGG
TCATCGAGGACGTCCAGGCGTCGGAGGGAGAGATCGTTCTCTTCATCGACGAACTGCACACGGTCGTCGGCGCGGGCGCG
ACGGGCGAGGGCTCCATGGACGCGGGCAACATGCTCAAACCCGCTCTGGCCCGCGGGGAACTGCACGTGGTGGGTGCGAC
GACCATCGACGAGTACCGCAAGTACGTCGAGAAGGACGCCGCGCTCGAACGCCGCTTCCAGCCGGTGATGGTGCCGGAGC
CGACGGTCGAGGAGACCGTGCAGATCCTGGAGGGCCTGCGCGACGCGTACGAGGCGCACCACCAGGTCCGCTTCGCCGAC
GGCGCCCTGGCCGCGGCGGCGGAACTGTCCGACCGCTACATCAGCGACCGGTTCCTGCCCGACAAGGCGATCGACGTGAT
GGACCAGGCGGGCGCCCGGGTGCGGCTGCGCGGCGCCGTCCGCTCGACCGAGGTCGCCGAACGCGAGGACCGCGTCGCGA
AGCTGCGCCGTGAACGCGATCAGGCCGTGGCCGCCGAGGACTTCGAGCGCGCGGGGCAGCTCAAGGGACGGATCACCGAG
ACGGAGGGCGAGCTCGCCGGCATCGAGGAGCGGCGCGCCGGTGTCGTCTCCGTGACCGCCCGTGACATCGCGGACGTCGT
CTCCCGCCGCACCGGCATCCCGGTGTCCCAACTCACCGCCAGCGAGAAGGAGAAGCTCCTGAAGCTGGAGGAGGAGATGC
ACTCCCGGATCGTCGGCCAGGACGAGGCGGTCACCGCCGTCTCGCAGGCGGTACGCCGCAACCGGGCCGGCATGGGCGAT
CCGAACCGCCCCGTGGGCTCCTTCCTCTTCCTCGGCCCCACCGGCGTGGGCAAGACGGAACTGGCCAAGACCCTCGCCGA
GCAGCTCTTCGGCGACGAGAGCCGCATGGTCCGCTTCGACATGAGCGAGTTCCAGGAGAAGCACACGGTCGCCCGTCTCG
TCGGGGCGCCTCCGGGATACGTCGGTTACGACGAGGCGGGGCAGCTCACCGAGAAGGTCCGCAGACAGCCGTACAGCGTC
GTCCTGTTCGACGAGGTGGAGAAGGCGCACCCCGATGTCTTCAACACGCTGCTCCAGATCCTCGACGACGGGCGCCTGAC
GGACGGTCAGGGCCGCACCGTCGACTTCCGGCACTGCGTCGTCATCATGACGTCCAACATCGGCGCGCACCGCATCCTGG
ACCACAAGGGCGATGTGTCCGATCTCAAGGACGCGTTGATGGACGAGCTGCGGACCCGGTTCCTGCCCGAGTTCCTCAAC
CGCATCGACGACATCATCATCTTCCACGGCCTGAAGGAGGACGATCTGGCGCAGATCGTCGAGCATCTCCTCGGCCGGAG
CGAACGCCGGGTGCGCGCGCAGGGCATGAAGCTGGAGGTGACCGAGGCGGCCAAGAAGCTGCTGGTCGCCCACGGCCATC
AACCGGAGTTCGGTGCCCGCCCGTTGAGGCGCACGATCCAGACGGAGCTCGACAACGGCATCGCGGAGCTGCTGCTCGGC
GGCGAGGCCGAACCCGGCGACACGATCGTCGCCGACGACCGGGACGGCTCCGTTCGCTGCACCGTGCGCAAGGGTGCCGG
GGGCAACAGCGCCCCGGACGAGGGGCCTTCGGGCGACGGCGCGGAGGCGGAGCGGGGGAGCGCGGTGCCCGCCGGCGACA
CAGGCCACGACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
50.562 |
93.466 |
0.473 |
| clpC | Streptococcus mutans UA159 |
43.527 |
94.632 |
0.412 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
44.613 |
92.065 |
0.411 |
| clpC | Streptococcus thermophilus LMD-9 |
42.233 |
96.149 |
0.406 |
| clpC | Streptococcus thermophilus LMG 18311 |
42.387 |
95.799 |
0.406 |
| clpE | Streptococcus pneumoniae D39 |
52.488 |
72.695 |
0.382 |
| clpE | Streptococcus pneumoniae R6 |
52.488 |
72.695 |
0.382 |
| clpE | Streptococcus pneumoniae Rx1 |
52.488 |
72.695 |
0.382 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.412 |
72.579 |
0.38 |
| clpE | Streptococcus mutans UA159 |
52.683 |
71.762 |
0.378 |
| clpC | Streptococcus pneumoniae TIGR4 |
44.628 |
84.714 |
0.378 |
| clpC | Streptococcus pneumoniae Rx1 |
44.49 |
84.714 |
0.377 |
| clpC | Streptococcus pneumoniae D39 |
44.49 |
84.714 |
0.377 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
51.597 |
73.046 |
0.377 |