Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG917_RS28665 Genome accession   NZ_CP107948
Coordinates   6441359..6442393 (-) Length   344 a.a.
NCBI ID   WP_328321043.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00388     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6436359..6447393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG917_RS28650 (OG917_28655) - 6438329..6439090 (-) 762 WP_328321038.1 MerR family transcriptional regulator -
  OG917_RS28655 (OG917_28660) sph 6439228..6440220 (-) 993 WP_328321040.1 sphingomyelin phosphodiesterase -
  OG917_RS28660 (OG917_28665) - 6440497..6441396 (+) 900 WP_328321041.1 oxygenase MpaB family protein -
  OG917_RS28665 (OG917_28670) cytR 6441359..6442393 (-) 1035 WP_328321043.1 LacI family DNA-binding transcriptional regulator Regulator
  OG917_RS28670 (OG917_28675) - 6442551..6444041 (-) 1491 WP_328321045.1 M1 family metallopeptidase -
  OG917_RS28675 (OG917_28680) - 6444263..6445900 (+) 1638 WP_328321047.1 ABC-F family ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36729.84 Da        Isoelectric Point: 6.1026

>NTDB_id=649965 OG917_RS28665 WP_328321043.1 6441359..6442393(-) (cytR) [Streptomyces sp. NBC_00388]
MPDPTHGSRPTLEAVAARAGVSRATASRVVNGGAGVRQPLVDRVQEAVDELGYVPNHAARTLVTRRNGAVAVIIAEPEIR
IFSDPFFSQQLRGISRELTLHDSQLVLLLVEGRKDYDRIGRYLAGGHVDGALAFSLHTEDPLPAVIHRVGIPTVFGGRPV
WAGPESGLALPYADCDNRGGARAAVQHLVSLGRGRIAHIAGPQDQTSGIDRLDGYRDVLLDVDPALTAQGAFTVESGAAA
MAELLERRPGLDAVFAANDLMASGALQVLREQGKRVPDDVAVVGFDDMEKVAECTDPPLTTVRQDIEGMGRLMVRMLLRG
LDGKSVARPDSVIMPTDLVRRVSA

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=649965 OG917_RS28665 WP_328321043.1 6441359..6442393(-) (cytR) [Streptomyces sp. NBC_00388]
TTGCCCGACCCGACCCACGGCTCCCGGCCGACCCTGGAGGCCGTCGCAGCCCGCGCGGGTGTGTCGCGGGCGACGGCCTC
GCGTGTCGTCAACGGCGGCGCCGGTGTGCGGCAGCCGCTGGTGGACCGGGTCCAGGAGGCCGTCGACGAGCTCGGCTACG
TGCCGAACCACGCGGCCAGGACGCTGGTCACCCGGCGCAACGGGGCGGTCGCCGTGATTATCGCGGAGCCGGAGATCCGG
ATCTTCTCGGATCCCTTCTTCTCTCAGCAGCTGCGTGGCATCAGCCGCGAACTGACCTTGCACGACTCGCAGTTGGTGCT
GCTGCTGGTCGAGGGCAGGAAGGACTACGACCGGATCGGCCGCTATCTGGCCGGGGGCCATGTGGACGGCGCGCTGGCCT
TCTCCCTGCACACCGAGGACCCGCTGCCCGCAGTGATCCACCGGGTGGGGATCCCCACGGTCTTCGGCGGCCGTCCGGTG
TGGGCGGGGCCGGAGTCCGGTCTCGCGCTGCCCTACGCCGACTGCGACAACCGCGGCGGCGCCCGCGCCGCCGTCCAGCA
CCTGGTCTCCCTGGGGCGCGGACGCATCGCCCACATCGCGGGCCCGCAGGACCAGACATCGGGGATCGACCGGCTGGACG
GCTACCGGGATGTGCTCCTGGACGTCGACCCCGCGCTCACCGCACAGGGGGCGTTCACGGTGGAGAGCGGCGCCGCCGCG
ATGGCGGAGCTGCTGGAGCGGCGGCCCGGGCTCGACGCGGTGTTCGCGGCGAACGATCTGATGGCCTCGGGGGCACTGCA
GGTCCTGCGGGAGCAGGGCAAACGTGTACCGGACGACGTGGCGGTGGTGGGGTTCGACGACATGGAGAAGGTCGCCGAGT
GCACCGACCCACCACTGACGACGGTCCGCCAGGACATCGAGGGGATGGGCAGGTTGATGGTCCGCATGCTGCTGCGCGGG
CTGGACGGGAAGAGCGTCGCCAGGCCCGACTCCGTGATCATGCCGACGGATCTGGTCCGCCGGGTCTCCGCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(185-343)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.135

99.419

0.369