Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG917_RS27705 Genome accession   NZ_CP107948
Coordinates   6229760..6230404 (-) Length   214 a.a.
NCBI ID   WP_328320689.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00388     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6224760..6235404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG917_RS27685 (OG917_27685) - 6225888..6226412 (+) 525 WP_328320683.1 hypothetical protein -
  OG917_RS27690 (OG917_27690) aceB 6226638..6228260 (-) 1623 WP_328320685.1 malate synthase A -
  OG917_RS27695 (OG917_27695) - 6228474..6229055 (-) 582 WP_328322233.1 nucleotidyltransferase family protein -
  OG917_RS27700 (OG917_27700) - 6229379..6229687 (+) 309 WP_328320687.1 DUF5955 family protein -
  OG917_RS27705 (OG917_27705) vraR 6229760..6230404 (-) 645 WP_328320689.1 response regulator transcription factor Regulator
  OG917_RS27710 (OG917_27710) - 6230401..6231606 (-) 1206 WP_328320691.1 sensor histidine kinase -
  OG917_RS27715 (OG917_27715) - 6231742..6232785 (+) 1044 WP_328320693.1 ABC transporter permease -
  OG917_RS27720 (OG917_27720) - 6232782..6233480 (+) 699 WP_328320695.1 ABC transporter ATP-binding protein -
  OG917_RS27725 (OG917_27725) - 6233574..6234377 (-) 804 WP_328320697.1 IclR family transcriptional regulator -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 22223.46 Da        Isoelectric Point: 6.7644

>NTDB_id=649962 OG917_RS27705 WP_328320689.1 6229760..6230404(-) (vraR) [Streptomyces sp. NBC_00388]
MTIRLLLADDHPVVRAGLRAVLDTEPGFRVGGEAATAERAVELAASGEFDVVLMDLQFGAGMHGAEATALIASVAGAPRV
LVLTTYDTDADILAAVEAGASGYLLKDAPPEELAAAVRTAAAGRSALAPAVAHRLMDRMRAPGASLTRRELEVLQLVADG
LSNQQISKELFLSQATVKSHLVHIYAKLGVDSRTSAVAAASARRLIRRAGGSAH

Nucleotide


Download         Length: 645 bp        

>NTDB_id=649962 OG917_RS27705 WP_328320689.1 6229760..6230404(-) (vraR) [Streptomyces sp. NBC_00388]
ATGACCATCCGGCTGCTGCTCGCGGACGACCATCCGGTGGTCCGGGCCGGGCTGCGCGCCGTCCTCGACACCGAGCCCGG
CTTCCGGGTCGGCGGGGAGGCGGCAACCGCCGAACGGGCCGTGGAGCTGGCCGCTTCGGGAGAGTTCGATGTCGTCCTGA
TGGATCTCCAGTTCGGCGCGGGCATGCACGGAGCGGAGGCGACGGCCTTGATCGCCTCCGTCGCAGGAGCGCCGCGGGTC
CTGGTGCTGACGACGTACGACACGGACGCGGACATCCTGGCCGCGGTCGAGGCGGGCGCGTCCGGCTATCTGCTCAAGGA
CGCGCCGCCGGAGGAACTGGCCGCCGCCGTGCGCACGGCGGCGGCGGGCCGCTCGGCGCTGGCACCTGCCGTCGCCCACC
GGCTGATGGACCGGATGCGCGCGCCGGGCGCGTCACTCACCCGCCGTGAGCTGGAGGTGCTGCAGCTGGTCGCGGACGGT
CTGTCGAACCAGCAGATCAGCAAGGAGCTGTTCCTCAGCCAGGCGACGGTGAAATCCCATCTGGTGCACATCTACGCCAA
GCTGGGTGTCGACTCCCGGACCTCCGCGGTGGCCGCGGCCTCGGCGCGGCGGCTCATCCGCCGGGCCGGTGGCTCGGCAC
ACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-117)

Bacterial regulatory proteins, luxR family (GerE)

(145-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.143

98.131

0.364