Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG917_RS25915 Genome accession   NZ_CP107948
Coordinates   5784065..5784859 (-) Length   264 a.a.
NCBI ID   WP_328320031.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00388     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5779065..5789859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG917_RS25900 (OG917_25905) - 5779197..5779928 (+) 732 WP_328322184.1 GNAT family N-acetyltransferase -
  OG917_RS25905 (OG917_25910) - 5780055..5781860 (+) 1806 WP_328320027.1 IucA/IucC family siderophore biosynthesis protein -
  OG917_RS25910 (OG917_25915) - 5781899..5783869 (+) 1971 WP_328320029.1 ATP-dependent DNA helicase -
  OG917_RS25915 (OG917_25920) dinR/lexA 5784065..5784859 (-) 795 WP_328320031.1 transcriptional repressor LexA Regulator
  OG917_RS25920 (OG917_25925) nrdR 5785401..5785913 (+) 513 WP_328320033.1 transcriptional regulator NrdR -
  OG917_RS25925 (OG917_25930) - 5786039..5788924 (+) 2886 WP_328320035.1 vitamin B12-dependent ribonucleotide reductase -
  OG917_RS25930 (OG917_25935) - 5789211..5789816 (+) 606 WP_328320037.1 YdbC family protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28574.35 Da        Isoelectric Point: 7.4240

>NTDB_id=649957 OG917_RS25915 WP_328320031.1 5784065..5784859(-) (dinR/lexA) [Streptomyces sp. NBC_00388]
MTTTADTATITAQDRSQNRLEPGHAMNDAAQGPEGQLPPRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQTTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHN
AAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=649957 OG917_RS25915 WP_328320031.1 5784065..5784859(-) (dinR/lexA) [Streptomyces sp. NBC_00388]
GTGACCACGACCGCAGACACCGCCACCATCACCGCCCAGGACCGTTCGCAGAACCGACTCGAGCCGGGGCATGCCATGAA
CGACGCAGCACAGGGGCCCGAAGGTCAGCTGCCCCCGCGCCCCGCACGCTCGCTTCCCGGACGACCTCCCGGCATCCGGG
CGGACAGCTCCGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTGATCAGGGATTCCGTGCAGCGTCGTGGATATCCG
CCCTCCATGCGCGAGATCGGTCAGGCGGTGGGGCTGTCCAGCACCTCGTCAGTCGCTCATCAGCTGATGGCTCTGGAGCG
CAAGGGCTTCCTGCGCCGCGACCCGCACCGCCCCCGGGCGTACGAGGTCAGGGGCTCCGATCAGCCGAGCACCCAGACCA
CCGACACCACAGGCAAGCCCGCCGCTTCGTACGTGCCCCTGGTCGGCCGGATCGCCGCCGGTGGCCCGATCCTGGCCGAG
GAGTCGGTCGAGGACGTCTTTCCGCTCCCCCGGCAGCTGGTCGGCGACGGCGAGCTGTTCGTTCTCAAGGTCGTCGGGGA
CTCGATGATCGAGGCCGCGATCTGTGACGGCGACTGGGTCACGGTGCGACGCCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCGGCCATGCTGGAGGGCGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTGTGGCTGCTGCCTCACAAC
GCCGCCTACCAGCCGATTCCCGGTGACGAAGCCACCATCCTCGGCAAGGTGGTGGCTGTGCTCCGACGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371