Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG917_RS14355 Genome accession   NZ_CP107948
Coordinates   3183803..3184783 (-) Length   326 a.a.
NCBI ID   WP_328317990.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00388     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3178803..3189783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG917_RS14340 (OG917_14355) - 3180096..3180842 (+) 747 WP_328317987.1 DUF6227 family protein -
  OG917_RS14345 (OG917_14360) - 3181002..3181976 (-) 975 WP_328317988.1 YafY family protein -
  OG917_RS14350 (OG917_14365) - 3182039..3183613 (+) 1575 WP_328317989.1 MFS transporter -
  OG917_RS14355 (OG917_14370) rpoS 3183803..3184783 (-) 981 WP_328317990.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG917_RS14360 (OG917_14375) - 3184975..3185559 (+) 585 WP_328317991.1 N-acetyltransferase family protein -
  OG917_RS14365 (OG917_14380) - 3185635..3186414 (-) 780 WP_328317992.1 class III extradiol ring-cleavage dioxygenase -
  OG917_RS14370 (OG917_14385) - 3186509..3187024 (+) 516 WP_328317993.1 MarR family transcriptional regulator -
  OG917_RS14375 (OG917_14390) - 3187139..3188668 (-) 1530 WP_328317994.1 MFS transporter -
  OG917_RS14380 (OG917_14395) - 3189063..3189701 (-) 639 WP_328317995.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36362.05 Da        Isoelectric Point: 5.0266

>NTDB_id=649930 OG917_RS14355 WP_328317990.1 3183803..3184783(-) (rpoS) [Streptomyces sp. NBC_00388]
MATRAVARRSDRASSVRAVGGEIADRDLVGMYLDEIARTPLLDAEKEVELSQTIEAGVFAQQVLDGSVQSEAAGASHGEL
EALVAAGERAKDVFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIAD
QSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEHEEIAAELDTKPSRVSDVLDWARDPVSLNMPVDDQGETQFGDLLED
TSAVSPEQSVMTLLRSEELDELIGKLDHRTASIIKMRFGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKMADDV
GFDAAA

Nucleotide


Download         Length: 981 bp        

>NTDB_id=649930 OG917_RS14355 WP_328317990.1 3183803..3184783(-) (rpoS) [Streptomyces sp. NBC_00388]
ATGGCAACCCGTGCCGTCGCCCGTCGTTCCGACCGGGCAAGCAGCGTTCGCGCCGTAGGCGGGGAGATCGCCGACCGCGA
CCTGGTCGGCATGTACCTCGATGAAATCGCACGTACGCCGCTGCTCGACGCCGAGAAGGAGGTCGAGCTGTCCCAGACCA
TAGAGGCCGGGGTGTTCGCCCAGCAGGTTCTCGACGGTTCCGTGCAGAGCGAGGCGGCCGGGGCCTCGCACGGTGAACTG
GAGGCGCTGGTCGCCGCCGGGGAGCGCGCCAAGGATGTCTTCATCCGCTCCAACCTGCGTCTGGTCGTCGCTGTGGCGCG
CCGCTATCCGCGCGCCGGTCTGCCCCTGCTCGACCTCATCCAGGAGGGGAACGCCGGCCTGGTGCGCGCGGTCGAGAAGT
TCGACTACGCCAAAGGCTTCAAGTTCTCCACGTATGCCACCTGGTGGATCCGGCAGGCGATCACCCGGTCCATAGCCGAC
CAGTCGCGTACCATCCGGCTCCCTGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGCCGTGTCCAGCGCGAGTTCAACCG
CGAACACGGCCGTGACCCGGAGCATGAGGAGATCGCTGCCGAGCTGGACACCAAGCCGTCCCGTGTGAGCGATGTACTGG
ACTGGGCCCGTGACCCGGTCAGCCTGAACATGCCGGTGGACGACCAGGGCGAGACCCAGTTCGGTGACCTCCTGGAGGAC
ACGTCGGCGGTATCGCCCGAGCAGTCGGTCATGACGCTGCTGCGCAGTGAGGAGCTCGACGAGCTGATCGGCAAGCTCGA
TCACCGCACGGCTTCGATCATCAAGATGCGCTTCGGTATCGACGACGGCCGGGAGCGGACGCTGACCGAGGTCGGTAAGG
AGCACGGTCTGACCCGCGAGCGGATCCGCCAGATCGAGAAGCACGCGCTGCTCGAACTGAAGAAGATGGCGGACGACGTG
GGCTTCGACGCGGCGGCGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(173-249)

Sigma-70, region 4 (Sigma70_r4)

(263-315)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(27-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40

92.025

0.368