Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG917_RS10880 Genome accession   NZ_CP107948
Coordinates   2381158..2383092 (+) Length   644 a.a.
NCBI ID   WP_328317368.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00388     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2376158..2388092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG917_RS10865 (OG917_10870) - 2377378..2377677 (+) 300 WP_328317365.1 YtxH domain-containing protein -
  OG917_RS10870 (OG917_10875) - 2377707..2379176 (+) 1470 WP_328317366.1 FGGY family carbohydrate kinase -
  OG917_RS10875 (OG917_10880) rcrP 2379425..2381158 (+) 1734 WP_328317367.1 ABC transporter ATP-binding protein Regulator
  OG917_RS10880 (OG917_10885) rcrQ 2381158..2383092 (+) 1935 WP_328317368.1 ABC transporter ATP-binding protein Regulator
  OG917_RS10885 (OG917_10890) - 2383287..2384483 (-) 1197 WP_328317369.1 RNA polymerase sigma factor -
  OG917_RS10890 (OG917_10895) dnaG 2384654..2386555 (-) 1902 WP_328317370.1 DNA primase -
  OG917_RS10895 (OG917_10900) - 2386668..2387930 (-) 1263 WP_328317371.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 644 a.a.        Molecular weight: 69210.88 Da        Isoelectric Point: 6.3334

>NTDB_id=649921 OG917_RS10880 WP_328317368.1 2381158..2383092(+) (rcrQ) [Streptomyces sp. NBC_00388]
MAGPGGRMMTGPTQKSMDFKGSGKRLLRLLAQDRPALFAMLLAVIGSVALSVVGPKILGRATDLIFGGIIGRQLPAGTTK
AQALKALHARGQGAMADMLSGVDFTPGKGIDFTQVGQILLLALAAFACAGLLMLVTTRLAARIINQAMFRVREEIQAKLS
RLPLSYFDKAKRGEVLSRTTNDVDNIGQTMQQTMGQLMNSLLTIIGVLAMMFWISWILALVALVTVPLSVLVATRVGKRS
QPQFVQQWKVTGKLNAHIEEMYTGHALVKIFGRQAESAEAFREQNDALYEAGFKAQFNSGIMQPLMMFVSNINYVLVAVI
GGLRVASGTLSIGDVQAFIQYSRQFSQPLTQVASMANLVQSGVASAERIFELLDAEEQTPDAEASSGAAGRPAPSRGSIS
LEKVSFRYEADKPLIDDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGTDVATMTREELRSGIGMVLQ
DTWLFGGTIAENIAYGSARTVTRDEVEEAARAAHADRFIRTLPEGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVL
DEATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGAIVEQGSHEELLAADGAYARLYAAQFAQAV
VEVE

Nucleotide


Download         Length: 1935 bp        

>NTDB_id=649921 OG917_RS10880 WP_328317368.1 2381158..2383092(+) (rcrQ) [Streptomyces sp. NBC_00388]
ATGGCCGGTCCTGGTGGACGCATGATGACGGGACCGACCCAGAAGTCCATGGACTTCAAGGGATCGGGCAAGCGGCTGCT
GCGGCTGCTCGCGCAGGACCGTCCCGCCCTTTTCGCGATGCTGCTGGCCGTGATCGGCAGCGTCGCCCTCTCGGTCGTCG
GACCGAAGATCCTCGGCCGGGCGACCGACTTGATCTTCGGCGGGATCATCGGCCGGCAGCTGCCGGCGGGGACGACCAAG
GCCCAGGCGCTGAAGGCCCTGCACGCCCGGGGCCAGGGCGCGATGGCCGACATGCTCTCCGGCGTGGACTTCACCCCGGG
CAAGGGCATCGACTTCACGCAGGTGGGTCAGATCCTGCTGCTGGCGCTGGCGGCCTTCGCCTGTGCGGGTCTGCTGATGC
TCGTCACCACCCGGCTCGCGGCCCGGATCATCAACCAGGCCATGTTCAGGGTGCGTGAGGAGATCCAGGCGAAGCTCTCC
CGGCTGCCGCTGTCGTACTTCGACAAGGCCAAGCGCGGTGAGGTCCTCAGCCGCACGACCAACGATGTCGACAACATCGG
CCAGACGATGCAGCAGACCATGGGCCAGCTCATGAACTCGCTGCTCACCATCATCGGCGTGCTGGCGATGATGTTCTGGA
TCTCCTGGATCCTGGCCCTGGTCGCGCTGGTGACCGTACCGCTGTCGGTACTGGTGGCGACGCGGGTCGGCAAGCGGTCA
CAGCCGCAGTTCGTGCAGCAGTGGAAGGTCACGGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCACGCCCT
GGTCAAGATCTTCGGGCGGCAGGCGGAGTCGGCCGAGGCCTTCCGCGAGCAGAACGACGCCCTGTACGAGGCGGGGTTCA
AGGCGCAGTTCAACAGCGGCATCATGCAGCCGCTGATGATGTTCGTCTCCAACATCAACTATGTGCTGGTGGCGGTCATC
GGCGGACTGCGGGTCGCTTCCGGCACGCTGTCCATCGGCGACGTCCAGGCCTTCATCCAGTACTCGCGGCAGTTCTCGCA
GCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGTGTGGCGTCCGCCGAGCGGATCTTCGAACTGCTCG
ACGCGGAGGAGCAGACGCCCGACGCCGAAGCCTCCTCCGGTGCGGCCGGTCGCCCGGCCCCGTCGCGCGGCAGCATCTCG
CTGGAGAAGGTCTCCTTCCGCTACGAGGCCGACAAGCCGCTCATCGACGATCTGTCGCTCTCGGTCGAACCGGGACACAC
GGTCGCCATCGTCGGACCGACCGGCGCGGGCAAGACGACGCTGGTCAATCTCCTGATGCGGTTCTACGAGGTGACCGGCG
GGCGGATCACGCTCGACGGGACCGACGTGGCGACGATGACGCGTGAGGAACTGCGCTCCGGTATAGGCATGGTGCTCCAG
GACACCTGGCTGTTCGGCGGCACGATCGCCGAGAACATCGCGTACGGCTCCGCGCGCACCGTCACCCGCGACGAGGTGGA
GGAGGCGGCACGGGCGGCCCACGCCGACCGTTTCATCCGCACCCTCCCCGAGGGCTACGACACGGTGATCGACGACGAGG
GCACGGGGGTGAGCGCGGGCGAGAAGCAGCTCATCACGATCGCGCGGGCCTTCCTGTCCGACCCGGTGATCCTGGTACTC
GACGAGGCGACGAGCTCCGTCGACACCCGTACCGAGGTACTCATCCAGAAGGCGATGGCGCGGCTGGCACACGGCCGTAC
GAGCTTCGTCATCGCCCACCGGCTCTCCACGATCCGGGACGCGGACGTGATTCTGGTGATGGAGAACGGGGCGATCGTGG
AACAGGGTTCGCACGAGGAGCTGCTGGCCGCCGACGGGGCGTACGCCCGGCTGTACGCGGCGCAGTTCGCGCAGGCCGTG
GTGGAGGTGGAGTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(38-349)

ABC transporter (ABC_tran)

(416-565)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.129

96.273

0.396