Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG917_RS10875 Genome accession   NZ_CP107948
Coordinates   2379425..2381158 (+) Length   577 a.a.
NCBI ID   WP_328317367.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00388     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2374425..2386158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG917_RS10845 (OG917_10850) - 2374733..2375866 (-) 1134 WP_328317364.1 SAVED domain-containing protein -
  OG917_RS10865 (OG917_10870) - 2377378..2377677 (+) 300 WP_328317365.1 YtxH domain-containing protein -
  OG917_RS10870 (OG917_10875) - 2377707..2379176 (+) 1470 WP_328317366.1 FGGY family carbohydrate kinase -
  OG917_RS10875 (OG917_10880) rcrP 2379425..2381158 (+) 1734 WP_328317367.1 ABC transporter ATP-binding protein Regulator
  OG917_RS10880 (OG917_10885) rcrQ 2381158..2383092 (+) 1935 WP_328317368.1 ABC transporter ATP-binding protein Regulator
  OG917_RS10885 (OG917_10890) - 2383287..2384483 (-) 1197 WP_328317369.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62501.03 Da        Isoelectric Point: 7.0991

>NTDB_id=649920 OG917_RS10875 WP_328317367.1 2379425..2381158(+) (rcrP) [Streptomyces sp. NBC_00388]
MLISLLRTYLRPYKKPMALLALLQLLQTCATLYLPTLNADIIDNGVVKGDSGYILSFGGLMVAISVVQVICNMGAVYFGA
RTAAALGRDIRAGVFDRVQSFSAREVGHFGAPSLITRTTNDVQQIQMLVLMSFTLMASAPIMCVGAIVLALGQDVPLSLV
LIAVVPVMLVLVSLIVRRMRPLFRKMQVRLDMVNRVLREQITGNRVIRAFVKDAYEKERFKGANTELTDVSLGTARLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGAMQIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLGTDSSVVP
PLAPVTELARHGHLEIRGAGFKYPGAEASVLREVALEALPGQTTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGTDVR
ELDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALDVAQAKGFVEKLEAGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALRRETAESTVVIVAQRVSTIRDADRIVVMDEGRVVGTGRHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=649920 OG917_RS10875 WP_328317367.1 2379425..2381158(+) (rcrP) [Streptomyces sp. NBC_00388]
GTGCTCATATCACTTCTGCGGACCTACTTGCGTCCGTACAAGAAACCCATGGCCCTGCTGGCGCTGCTTCAGCTGCTCCA
GACGTGCGCCACCCTCTATCTGCCCACGCTCAACGCGGACATCATTGACAACGGTGTCGTGAAGGGTGACTCGGGTTACA
TCCTGAGCTTCGGCGGTCTCATGGTCGCCATCAGCGTGGTGCAGGTGATCTGCAACATGGGCGCCGTGTACTTCGGCGCC
AGGACCGCCGCGGCGCTCGGCCGGGACATCCGGGCCGGTGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGCGAGGTCGG
CCACTTCGGCGCCCCGTCCCTCATCACCCGCACGACCAACGACGTCCAGCAGATCCAGATGCTGGTCCTGATGTCGTTCA
CCCTGATGGCCTCGGCGCCGATCATGTGCGTGGGAGCGATCGTGCTGGCCCTCGGCCAGGACGTACCGCTCTCGCTCGTC
CTGATCGCCGTCGTGCCGGTCATGCTCGTGCTGGTCTCCCTGATCGTCCGGCGGATGCGGCCGCTCTTCCGGAAGATGCA
GGTCCGGCTCGACATGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGTGTCATCCGCGCCTTCGTGAAGGACG
CGTACGAGAAGGAGCGCTTCAAGGGCGCCAACACCGAGCTGACCGATGTCTCCCTGGGGACCGCCCGGCTGATGGCCCTG
ATGTTCCCGACGGTGATGACCGTGGTGAACGTGTCGTCGATCGCGGTCGTCTGGTTCGGCGCGCACCGGATCGACAGCGG
TGCGATGCAGATCGGGGCGCTCACCGCGTTCCTGTCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGTGCGGAGGTCTGCGCCGAGCGGATCCAGGAGGTGCTCGGCACCGACTCCAGCGTCGTACCG
CCGCTCGCGCCGGTCACCGAGCTGGCCAGGCACGGCCATCTGGAGATCCGCGGGGCCGGGTTCAAGTACCCGGGCGCCGA
GGCGTCGGTCCTGCGGGAGGTCGCCCTGGAGGCGCTGCCCGGTCAGACGACCGCGGTGATCGGGTCGACCGGCAGCGGGA
AGTCCACCCTGCTCGGTCTGGTCCCCCGGCTGTTCGACGCCACCGGCGGAGAGGTGCTGGTGGACGGCACCGACGTGCGG
GAGCTCGACCCCGTCCTGCTGGCCAAGACGGTGTCCCTGGTGCCCCAGAAGCCGTATCTCTTCTCCGGGACCGTCGCGAC
GAATCTGCGCTACGGGAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTCGACGTGGCGCAGGCCAAGGGGTTCG
TCGAGAAGCTGGAGGCCGGCCTCAACGCGCCGATCGCCCAGGGCGGTACCAATGTCTCCGGTGGGCAGCGCCAGCGGCTG
GCCATCGCCAGGACGCTGGTGCAACGGCCGGAGATCTACCTGTTCGACGACTCGTTCTCGGCGCTCGACTACGCCACGGA
CGCGGCGCTGCGGGCGGCGCTGCGGCGCGAGACCGCGGAGTCGACCGTGGTGATCGTGGCCCAGCGCGTCTCGACCATCC
GTGACGCGGACCGGATCGTCGTCATGGACGAGGGCCGGGTCGTCGGGACGGGCCGCCATCACGAGCTGATGGACGGCAAT
GAGACATACCGGGAGATCGTGCTCTCCCAGCTGACCGAGGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.137

100

0.406