Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG917_RS08355 Genome accession   NZ_CP107948
Coordinates   1812702..1813697 (+) Length   331 a.a.
NCBI ID   WP_328316910.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00388     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1807702..1818697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG917_RS08335 (OG917_08340) - 1808795..1809328 (+) 534 WP_328316908.1 hypothetical protein -
  OG917_RS08340 (OG917_08345) - 1809619..1810911 (+) 1293 WP_328316909.1 ABC transporter substrate-binding protein -
  OG917_RS08345 (OG917_08350) - 1810930..1811853 (+) 924 WP_328321741.1 sugar ABC transporter permease -
  OG917_RS08350 (OG917_08355) - 1811878..1812705 (+) 828 WP_328321743.1 carbohydrate ABC transporter permease -
  OG917_RS08355 (OG917_08360) cytR 1812702..1813697 (+) 996 WP_328316910.1 LacI family DNA-binding transcriptional regulator Regulator
  OG917_RS08360 (OG917_08365) - 1813716..1815653 (+) 1938 WP_328316911.1 cellulase family glycosylhydrolase -
  OG917_RS08365 (OG917_08370) - 1815743..1816171 (-) 429 WP_328316912.1 hypothetical protein -
  OG917_RS08370 (OG917_08375) - 1816212..1817378 (-) 1167 WP_328316913.1 SWIM zinc finger family protein -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 35031.75 Da        Isoelectric Point: 6.8338

>NTDB_id=649917 OG917_RS08355 WP_328316910.1 1812702..1813697(+) (cytR) [Streptomyces sp. NBC_00388]
MSPGPQAGPRPTIKDVAAEAGVSTAAVSKVFNNTGRISEPTRRRVLETAGRLGWSPSASASALRRSRTHTIAMVVRRPTD
VLGTDLHFSELITGLESELSPRGYGLLLHLTGDVREETALYERLAAEGRVDGAVLTEHRADDPRPPLLERLGLPAVLLGT
AHGSGVSEAVRHLLDLGHRRIAYVTGPTGLLHTRFRRQVFEETLAAADLTPVAVVHTDFTEAAATAATEQLLALEPRPTA
IVYANDSMAVCGIGTAQRAGLSVPGGLSVIGYDNLPVGSWIHPRLTTVDQYVQQAGAAAARALLAQCGEDVPTEPLTGQP
RLVVRESTGPV

Nucleotide


Download         Length: 996 bp        

>NTDB_id=649917 OG917_RS08355 WP_328316910.1 1812702..1813697(+) (cytR) [Streptomyces sp. NBC_00388]
GTGAGTCCGGGCCCGCAGGCCGGCCCCCGGCCCACGATCAAGGACGTCGCCGCGGAGGCCGGAGTCTCCACCGCCGCGGT
GTCCAAGGTCTTCAACAACACCGGCCGGATCTCCGAGCCCACCCGGCGCCGGGTCCTGGAGACGGCCGGGCGGCTCGGCT
GGTCGCCCAGCGCGTCGGCGAGCGCGCTGCGCCGGTCCCGTACGCACACGATCGCGATGGTCGTACGCCGGCCCACCGAC
GTGCTGGGTACCGATCTGCACTTCTCCGAGCTGATCACGGGGCTGGAGAGCGAGCTGTCGCCCCGTGGATACGGGCTGCT
GCTGCACCTGACCGGTGATGTGCGCGAGGAGACCGCGCTCTACGAGCGGCTCGCGGCCGAGGGCCGGGTCGACGGGGCCG
TTCTGACCGAGCACCGCGCCGACGACCCCCGGCCGCCCCTCCTCGAACGGCTCGGGCTGCCCGCCGTGCTGCTGGGCACG
GCACACGGCAGCGGAGTCAGCGAAGCCGTCCGTCATCTGCTGGACCTGGGCCACCGGCGCATCGCCTACGTCACCGGCCC
GACCGGGCTGCTGCACACCCGCTTCCGCCGGCAGGTCTTCGAGGAGACCCTGGCCGCGGCGGACCTGACCCCGGTCGCCG
TGGTCCACACGGACTTCACCGAAGCGGCGGCGACCGCCGCCACCGAGCAGCTGCTCGCCCTCGAACCGCGCCCGACCGCC
ATCGTCTACGCCAACGACTCGATGGCGGTGTGCGGCATCGGCACCGCGCAGCGCGCCGGACTCTCCGTCCCCGGCGGACT
CTCCGTCATCGGCTACGACAACCTGCCGGTCGGCAGCTGGATCCACCCCCGGCTGACCACGGTCGACCAGTACGTCCAGC
AGGCCGGCGCAGCCGCAGCCCGGGCGCTGCTCGCGCAGTGCGGCGAGGACGTACCCACTGAACCCCTCACCGGACAACCC
CGGCTCGTGGTACGCGAGTCGACCGGTCCCGTCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(12-57)

Periplasmic binding protein-like domain (Peripla_BP_3)

(170-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.202

100

0.369