Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS70_RS38085 Genome accession   NZ_CP107945
Coordinates   8494991..8495653 (+) Length   220 a.a.
NCBI ID   WP_150497990.1    Uniprot ID   A0ABV5RP09
Organism   Streptomyces sp. NBC_00390     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8489991..8500653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS70_RS38070 (OHS70_38145) - 8490327..8491330 (+) 1004 Protein_7522 IS5 family transposase -
  OHS70_RS38075 (OHS70_38150) - 8491398..8493668 (-) 2271 WP_328405318.1 MMPL family transporter -
  OHS70_RS38080 (OHS70_38155) - 8493844..8495016 (+) 1173 WP_328405320.1 histidine kinase -
  OHS70_RS38085 (OHS70_38160) vraR 8494991..8495653 (+) 663 WP_150497990.1 response regulator transcription factor Regulator
  OHS70_RS38090 (OHS70_38165) - 8497275..8497460 (-) 186 Protein_7526 ISAzo13 family transposase -
  OHS70_RS38095 (OHS70_38170) - 8497674..8499128 (-) 1455 WP_328405324.1 integrin-like protein -
  OHS70_RS38100 (OHS70_38175) - 8499707..8500273 (+) 567 WP_328392304.1 hypothetical protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23496.28 Da        Isoelectric Point: 5.3485

>NTDB_id=649902 OHS70_RS38085 WP_150497990.1 8494991..8495653(+) (vraR) [Streptomyces sp. NBC_00390]
MSIRVLVADDQTIIRTGLRIMLNAQPGIEVVGEAADGREAVRLARELRPDVCLFDIRMPVLDGLEATRLVAGPGVADPLA
VVVITTFDLDEYVYGSLRAGARGFLLKDTGPDLLAQAVRSASDGEALIAPSVTVRLLQAFADLPAGRPVAQPVSPVTARE
EQVLLAVARGLTNTEIADALHISLSTVKTHLASLMAKLGARNRVEIAMWAYETRRILPGT

Nucleotide


Download         Length: 663 bp        

>NTDB_id=649902 OHS70_RS38085 WP_150497990.1 8494991..8495653(+) (vraR) [Streptomyces sp. NBC_00390]
GTGTCCATTCGCGTCCTCGTCGCTGACGACCAGACGATCATCCGCACCGGGTTGCGGATCATGCTGAACGCCCAGCCCGG
CATCGAGGTGGTCGGCGAGGCCGCCGACGGGCGGGAAGCGGTACGTCTGGCCCGCGAACTACGCCCCGACGTCTGCCTGT
TCGACATCCGCATGCCCGTACTCGACGGGCTCGAGGCCACCCGGCTGGTCGCCGGCCCGGGCGTCGCCGACCCGCTGGCC
GTGGTCGTCATCACCACGTTCGACCTCGACGAGTACGTCTACGGCTCACTGCGTGCCGGCGCCCGCGGATTCCTCCTCAA
GGACACGGGACCGGACCTTCTGGCGCAGGCCGTACGGTCGGCGTCCGACGGTGAGGCGCTCATCGCACCGAGCGTCACCG
TCCGTCTGCTCCAGGCATTCGCGGACCTGCCCGCCGGCCGGCCCGTGGCCCAGCCGGTCTCCCCCGTCACCGCCCGCGAG
GAGCAGGTGCTCCTCGCCGTCGCTCGCGGGCTGACCAACACCGAGATCGCCGATGCACTGCACATCAGCCTCAGCACGGT
GAAGACGCATCTGGCCAGCCTGATGGCCAAACTCGGCGCCCGCAACCGGGTCGAGATCGCGATGTGGGCCTACGAAACGC
GCCGTATCCTCCCCGGAACCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.037

98.182

0.364